Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,276,999 – 3,277,130 |
Length | 131 |
Max. P | 0.891377 |
Location | 3,276,999 – 3,277,090 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 84.23 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -14.98 |
Energy contribution | -14.86 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.20 |
Mean z-score | -2.17 |
Structure conservation index | 0.64 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3276999 91 - 23771897 -AAAGCGAAAGCUGCAGAGGGCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCUAAUA-------------------------UUUAUGACAUUUCUUAUUAAUUAUUUAUCGACGCU -..(((....)))((.....))...(((.((((...(((((((....)))))))...-------------------------.....((....))..............)))).))) ( -19.40) >DroSec_CAF1 7155 89 - 1 -AAAGCGAAAGCUGCAGAAGUCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCUAAUA-------------------------UUUAUGGCACUUCUUAUUAAUUAUUUAUCGA--CU -..(((....)))..((((((....(.(((..(.(.(((((((....))))))).).-------------------------)..))).))))))).................--.. ( -20.00) >DroSim_CAF1 7788 114 - 1 -AAAGCGAAAGCUGCAGAAGUCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCUAAUAUUUAUGGCCAUUUAAAUGGCUAAUAUUUAUGGCACUUCUUAUUAAUUAUUUAUCGA--CU -..(((....)))..((((((....(.(((..(.(.((((((((((((((((((.......)))))))))))))))))).).)..))).))))))).................--.. ( -37.60) >DroEre_CAF1 7129 88 - 1 -AAAGCGAAAGCUGCAGAGGCCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCU-AUA-------------------------UUUAUGGCACUUCUUUUUAAUUAUUUAUCGA--CU -..(((....)))..(((((....((.(((.(((.((((((((....))))))-)).-------------------------)))))).))))))).................--.. ( -22.10) >DroYak_CAF1 7472 90 - 1 AAAAGCGAAAGCUACAGAGGCCAAUGGCAUCGGAAAUGGCUAUUUAAACGGCCAAUA-------------------------UUUAUGGCACUUCUUAUUAAUUAUUUAUCGA--CU ...(((....)))..(((((....((.(((..(.(.(((((........))))).).-------------------------)..))).))))))).................--.. ( -17.50) >consensus _AAAGCGAAAGCUGCAGAGGCCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCUAAUA_________________________UUUAUGGCACUUCUUAUUAAUUAUUUAUCGA__CU ...(((....)))..((((((((.((....))....(((((((....)))))))................................))))..))))..................... (-14.98 = -14.86 + -0.12)
Location | 3,277,034 – 3,277,130 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.29 |
Mean single sequence MFE | -26.34 |
Consensus MFE | -18.38 |
Energy contribution | -18.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -2.47 |
Structure conservation index | 0.70 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891377 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3277034 96 - 23771897 CCCGGAGUUCUAUCUAAAUCACGUACACCCACAGCUGAAA-AAAGCGAAAGCUGCAGAGGGCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCUAAUA-------------------- .((((((......))......(((...(((....(((...-..(((....))).))).)))..)))...))))...(((((((....)))))))...-------------------- ( -24.50) >DroSec_CAF1 7188 96 - 1 CCCCGAGUUCUAUCAAAAUCACGUACACCCACAGCUGAAA-AAAGCGAAAGCUGCAGAAGUCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCUAAUA-------------------- ..((((...((((.........((......))..(((...-..(((....))).)))......))))..))))...(((((((....)))))))...-------------------- ( -22.60) >DroSim_CAF1 7826 115 - 1 -CCCGAGUUCUAUCAAAAUCACGUACACCCACAGCUGAAA-AAAGCGAAAGCUGCAGAAGUCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCUAAUAUUUAUGGCCAUUUAAAUGGC -.((((...((((.........((......))..(((...-..(((....))).)))......))))..)))).....((((((((((((((((.......)))))))))))))))) ( -36.50) >DroEre_CAF1 7162 94 - 1 -CCCGAGUUCUAUCAAAAUCACGUACACCCGCAGCUGAAA-AAAGCGAAAGCUGCAGAGGCCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCU-AUA-------------------- -.((((........................((((((....-........))))))....(((...))).))))..((((((((....))))))-)).-------------------- ( -27.30) >DroYak_CAF1 7505 97 - 1 CCCUGUGUUCUAUCAAAAUCACGUACACCCACAGCUGAAAAAAAGCGAAAGCUACAGAGGCCAAUGGCAUCGGAAAUGGCUAUUUAAACGGCCAAUA-------------------- ..(((((......(........)......)))))((((.....(((....)))......(((...))).))))...(((((........)))))...-------------------- ( -20.80) >consensus CCCCGAGUUCUAUCAAAAUCACGUACACCCACAGCUGAAA_AAAGCGAAAGCUGCAGAGGCCAAUGGCAUCGGAAAUGGCCAUUUAAAUGGCUAAUA____________________ ..((((...((((.........((......))..(((......(((....))).)))......))))..))))...(((((((....)))))))....................... (-18.38 = -18.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:32 2006