Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,276,516 – 3,276,608 |
Length | 92 |
Max. P | 0.600924 |
Location | 3,276,516 – 3,276,608 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -26.63 |
Consensus MFE | -19.65 |
Energy contribution | -20.52 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.23 |
Mean z-score | -3.01 |
Structure conservation index | 0.74 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3276516 92 + 23771897 UUACUGGCAAACAUUUCAUGCAAAUCGCAA-UCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGUUGAUGA---UCGUGCUAAA ..............(((((((...(((...-.)))...((((((((((.....)))))))))))))))))((((((.......---.))))))... ( -27.20) >DroSec_CAF1 6638 95 + 1 UUACUGGCAAAGAUUUCAUGCAAAUUGCAA-UCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGUUGAUGAUAAUCGUGCUAAA ....(((((..((((((((.(((..(((..-(((.((.((((((((((.....)))))))))))).)))..)))..))))))).)))).))))).. ( -30.00) >DroSim_CAF1 7279 95 + 1 UUACUGGCAAACAUUUCAUGCAAAUUGCAA-UCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGCUGAUGAUAAUCGUGCUAAA ....(((((......(((((((...(((..-(((.((.((((((((((.....)))))))))))).)))..))))))..))))......))))).. ( -27.30) >DroEre_CAF1 6582 93 + 1 UUACUGGCAAACAUUUCAUGCAAAUUGCAAUUCGAGGUACUUUGUUGCCAAGUGCAAUAAGGCGCAUGAAGGCACGUUAAUGA---UCGUGCUAAA ..............(((((((....(((........)))(((((((((.....))))))))).)))))))((((((.......---.))))))... ( -26.50) >DroYak_CAF1 6894 93 + 1 UUACUGGCAAACAUUUCAUGCAAAUUGCACUUCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGUUAAUGA---UCGUGCUAAA ....(((((......((((......(((.(((((.((.((((((((((.....)))))))))))).)))))))).....))))---...))))).. ( -28.90) >DroAna_CAF1 8393 89 + 1 UUCCUGGCAAACAUUUCAUGCAAAAUGCAU-UUCAUU---UUAGUUGCCAAGUGCACGAAAAUGCAUGAAGGCAUGCUAAUGA---UAAUGACUAA ....(((((....(((((((((...(((((-((((..---.....))..)))))))......)))))))))...)))))....---.......... ( -19.90) >consensus UUACUGGCAAACAUUUCAUGCAAAUUGCAA_UCGAGUUACUUUGUUGCCAAGUGCAAUAAAGUGCAUGAAGGCAUGUUAAUGA___UCGUGCUAAA ..............(((((((...(((.....)))...((((((((((.....)))))))))))))))))((((((...........))))))... (-19.65 = -20.52 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:30 2006