Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,264,511 – 3,264,615 |
Length | 104 |
Max. P | 0.627920 |
Location | 3,264,511 – 3,264,615 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 92.94 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -23.68 |
Energy contribution | -24.52 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.09 |
Mean z-score | -1.59 |
Structure conservation index | 0.78 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627920 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3264511 104 + 23771897 CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACCAGAGUGGCCGCAGAUCCAUCAGGGCUGUCACUGUAAAACAGGCAUCAAUCUUGGC--CAGCACA .(((....((..(....)..))(((((((((.(((.(((((....))))).((((.(((....)))))))..(((.....))).))).)))))))))--..))).. ( -31.90) >DroSec_CAF1 43156 106 + 1 CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACCAGAGUGGCCGCCGAUCCAUCAGGGCUGUCACUGUAAAACAGGCAUCAGUCUUGGCCCCAGCACA .(((....((..(....)..))((((((((...((((((.....((((((.(((..........))).))))))(.....).))).)))))))))))....))).. ( -30.80) >DroSim_CAF1 46110 104 + 1 CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACCAGAGUGGCCGCCGAUCCAUCAGGGCUGUCACUGUAAAACAGGCAUCAAUCUUGGC--CAGCACA .(((....((..(....)..))((((((((...((((((.....((((((.(((..........))).))))))(.....).))).)))))))))))--..))).. ( -30.50) >DroEre_CAF1 44476 103 + 1 CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACUAGAGUGGCCACAGAUCCAUCAGAGCUGUCACUGUAAGCCAGGCAUCAAUCUUGGC--CAGCAC- .(((....((..(....)..))(((((((((.(((.(((((....))))).((((.((.....)).))))..(((.....))).))).)))))))))--..))).- ( -28.70) >DroYak_CAF1 44822 103 + 1 CUGCCACCGAAGCCAUAGAAUC-CAGAGAUUUAUGAGCCACCAGAGUGGCCACAGAUCCAUCAGAGCUGUCACUCUAGGCCAGGCAUCAAUCUUGGC--CAGCACA .(((.......((((((((.((-....)))))))).))....((((((...((((.((.....)).)))))))))).(((((((.......))))))--).))).. ( -29.10) >consensus CUGCCACCGAAGCCAAAGAAUCGCCAAGAUUUAUGAGCCACCAGAGUGGCCGCAGAUCCAUCAGGGCUGUCACUGUAAAACAGGCAUCAAUCUUGGC__CAGCACA .(((....((..(....)..))(((((((((.(((.(((((....))))).((((.(((....)))))))..(((.....))).))).)))))))))....))).. (-23.68 = -24.52 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:23 2006