Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,262,326 – 3,262,453 |
Length | 127 |
Max. P | 0.720540 |
Location | 3,262,326 – 3,262,424 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 88.34 |
Mean single sequence MFE | -25.55 |
Consensus MFE | -21.48 |
Energy contribution | -22.12 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.07 |
Mean z-score | -1.79 |
Structure conservation index | 0.84 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3262326 98 - 23771897 AAAAACGAGGUGUGACCGAAUCGGGUC-CCCAAUCCCAUUUGGUCAACGCACUCGCACACUGCUCGAAUUUUUGAUUAGCC---CCCGAAUUACGAAAUUAU .....((((((((((((((((.(((..-......))))))))))).)))).))))....(((.((((....)))).)))..---.................. ( -27.20) >DroSec_CAF1 40975 95 - 1 -AAAACGAGGUGUGACCGAAUCGGGUCCCCCAAUCCCAUUUGGUCAACGCACUCGCACACUGCUCGAAUUUUUGAUUAGCC---CCCGAAUUACGAAA---U -....((((((((((((((((.(((.........))))))))))).)))).))))....(((.((((....)))).)))..---..............---. ( -26.40) >DroSim_CAF1 43930 97 - 1 --AAACGAGGUGUGACCGAAUCGGGUGCCCCAAUCCCAUUUGGUCAACGCACUCGCACACUGCUCGAAUUUUUGAUUAGCC---CCCGAAUUACGAAAUUAU --...((((((((((((((((.((((......)))).)))))))).)))).))))....(((.((((....)))).)))..---.................. ( -27.50) >DroEre_CAF1 42262 95 - 1 ---AACGAGGUGUGACCGUAUCGGGUC-CCCAAUUCCAUUUGGCCAACGCACUCGCACACUGCUCGAAUUUUUGAUUAGCC---CCCGAAUUACGAAAUUAU ---..((((((((((((......))))-.((((......))))...)))).))))....(((.((((....)))).)))..---.................. ( -19.00) >DroYak_CAF1 42542 95 - 1 ---AACAAGGUGUGACCGAAUCGGGUA-CCCAAUUCCAUUUGGUCAACGCACUCGCACACUGCUCGAAUUUUUGAUUAGCC---CCCGAAUUACGAAAUUAU ---......((((((((((((.(((..-......))))))))))).))))..(((....(((.((((....)))).)))..---..)))............. ( -21.40) >DroAna_CAF1 42714 92 - 1 ---AAUGAGGUGUGACCGAAUCGGGUC-U----UCCGAUUUGGUCAACCCCCUCG-ACACUGCCCGAAUU-UUGAUUAGGCUUUCUGGCAUUACGAAAUUAU ---..(((((..((((((((((((...-.----.))))))))))))....)))))-....((((.(((..-...........))).))))............ ( -31.82) >consensus ___AACGAGGUGUGACCGAAUCGGGUC_CCCAAUCCCAUUUGGUCAACGCACUCGCACACUGCUCGAAUUUUUGAUUAGCC___CCCGAAUUACGAAAUUAU .....((((((((((((((((.((((......)))).)))))))).)))).))))....(((.((((....)))).)))....................... (-21.48 = -22.12 + 0.64)
Location | 3,262,361 – 3,262,453 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 86.44 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -19.84 |
Energy contribution | -20.32 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.10 |
Mean z-score | -2.32 |
Structure conservation index | 0.79 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3262361 92 - 23771897 UAUUGAUAUUUUCUGAUUAAAGUGUAAAAAAAAACGAGGUGUGACCGAAUCGGGUC-CCCAAUCCCAUUUGGUCAACGCACUCGCACACUGCU ....................(((((.........((((((((((((((((.(((..-......))))))))))).)))).)))).)))))... ( -27.10) >DroSec_CAF1 41007 91 - 1 UAUUGAUAUUUUCUGAUUGAAGUUUAAA--AAAACGAGGUGUGACCGAAUCGGGUCCCCCAAUCCCAUUUGGUCAACGCACUCGCACACUGCU ..((((...((((.....)))).)))).--....((((((((((((((((.(((.........))))))))))).)))).))))......... ( -25.70) >DroSim_CAF1 43965 90 - 1 UAUUGAUAUUUUCUGAUUGAAGUUUAAA---AAACGAGGUGUGACCGAAUCGGGUGCCCCAAUCCCAUUUGGUCAACGCACUCGCACACUGCU ..((((...((((.....)))).)))).---...((((((((((((((((.((((......)))).)))))))).)))).))))......... ( -26.80) >DroEre_CAF1 42297 87 - 1 UAUUGAUAUUUUCAGAUUGAAGUUUGA-----AACGAGGUGUGACCGUAUCGGGUC-CCCAAUUCCAUUUGGCCAACGCACUCGCACACUGCU .........((((((((....))))))-----))((((((((((((......))))-.((((......))))...)))).))))......... ( -21.70) >DroYak_CAF1 42577 87 - 1 UAUUGAUAUUUUCAGAUUGAAGUUUAC-----AACAAGGUGUGACCGAAUCGGGUA-CCCAAUUCCAUUUGGUCAACGCACUCGCACACUGCU ..((((.....))))............-----.....(((((((((((((.(((..-......)))))))))))...((....)))))))... ( -20.40) >DroAna_CAF1 42751 82 - 1 UAUUGAUACUUUUCAAUUGAAGUUUGG-----AAUGAGGUGUGACCGAAUCGGGUC-U----UCCGAUUUGGUCAACCCCCUCG-ACACUGCC ..((.(.(((((......))))).).)-----).(((((..((((((((((((...-.----.))))))))))))....)))))-........ ( -28.30) >consensus UAUUGAUAUUUUCUGAUUGAAGUUUAA_____AACGAGGUGUGACCGAAUCGGGUC_CCCAAUCCCAUUUGGUCAACGCACUCGCACACUGCU ..................................((((((((((((((((.((((......)))).)))))))).)))).))))......... (-19.84 = -20.32 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:22 2006