Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,250,335 – 3,250,542 |
Length | 207 |
Max. P | 0.981539 |
Location | 3,250,335 – 3,250,442 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -27.55 |
Consensus MFE | -24.95 |
Energy contribution | -25.20 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.91 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3250335 107 + 23771897 CUCGGUUAACGCUAACAGUCUGUCAUCGGUCAUUGUUUUGUUUUUCUUUUUUUC--CCUCCCCAUUUUGGCCCACUCGGAGUGUUUGGGCCAUGCGUGAGCCAAAUAAC ...((((.((((.(((((((((....)))..)))))).................--...........(((((((..(.....)..))))))).)))).))))....... ( -26.90) >DroSec_CAF1 29195 98 + 1 CUCAGUUAACGCAAACCGUCUGUCAUCGGUCAUUGUUUUGUUU-------UUUC----CCCCCAUUUUGGCCCACUCAGAGUGUUUGGGCCAUGCGUGAGCCAAAUAAC ....(((.(((((.((((........)))).............-------....----.........(((((((..(.....)..)))))))))))).)))........ ( -25.40) >DroSim_CAF1 32058 100 + 1 CUCGGUUAACGCAAACCGUCUGUCAUCGGUCAUUGUUUUGUUUUU-----UUUC----CCCCCAUUUUGGCCCACUCAGAGUGUUUGGGCCAUGCGUGAGCCAAAUAAC ...((((.(((((.((((........))))...............-----....----.........(((((((..(.....)..)))))))))))).))))....... ( -29.70) >DroYak_CAF1 30565 104 + 1 CUCGGUUAACGCUAACCGUCUGUCAUCGGUCAUUGUUUUGUUUUU-----UUUUCGUAUUCGUAUUUUGGCCCACUCAAAGUGUUUGGGCCAUGCGUGAGCCAAAUAAC ...((((.((((..((((........))))...............-----.................(((((((..(.....)..))))))).)))).))))....... ( -28.20) >consensus CUCGGUUAACGCAAACCGUCUGUCAUCGGUCAUUGUUUUGUUUUU_____UUUC____CCCCCAUUUUGGCCCACUCAGAGUGUUUGGGCCAUGCGUGAGCCAAAUAAC ...((((.((((.....(.(((....))).)....................................(((((((..(.....)..))))))).)))).))))....... (-24.95 = -25.20 + 0.25)
Location | 3,250,335 – 3,250,442 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -24.91 |
Energy contribution | -24.97 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.52 |
Structure conservation index | 0.94 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3250335 107 - 23771897 GUUAUUUGGCUCACGCAUGGCCCAAACACUCCGAGUGGGCCAAAAUGGGGAGG--GAAAAAAAGAAAAACAAAACAAUGACCGAUGACAGACUGUUAGCGUUAACCGAG .....(((((((.(.(((((((((..(.....)..)))))))...)).)))).--......................((((...((((.....))))..)))).)))). ( -24.30) >DroSec_CAF1 29195 98 - 1 GUUAUUUGGCUCACGCAUGGCCCAAACACUCUGAGUGGGCCAAAAUGGGGG----GAAA-------AAACAAAACAAUGACCGAUGACAGACGGUUUGCGUUAACUGAG .....(..(...((((((((((((..(.....)..))))))).........----....-------............(((((........))))))))))...)..). ( -25.00) >DroSim_CAF1 32058 100 - 1 GUUAUUUGGCUCACGCAUGGCCCAAACACUCUGAGUGGGCCAAAAUGGGGG----GAAA-----AAAAACAAAACAAUGACCGAUGACAGACGGUUUGCGUUAACCGAG .....((((...((((((((((((..(.....)..))))))).........----....-----..............(((((........))))))))))...)))). ( -27.50) >DroYak_CAF1 30565 104 - 1 GUUAUUUGGCUCACGCAUGGCCCAAACACUUUGAGUGGGCCAAAAUACGAAUACGAAAA-----AAAAACAAAACAAUGACCGAUGACAGACGGUUAGCGUUAACCGAG .....((((...((((.(((((((..(.....)..))))))).................-----.............((((((........))))))))))...)))). ( -28.80) >consensus GUUAUUUGGCUCACGCAUGGCCCAAACACUCUGAGUGGGCCAAAAUGGGGA____GAAA_____AAAAACAAAACAAUGACCGAUGACAGACGGUUAGCGUUAACCGAG .....((((...((((.(((((((..(.....)..)))))))....................................(((((........))))).))))...)))). (-24.91 = -24.97 + 0.06)
Location | 3,250,368 – 3,250,477 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 75.28 |
Mean single sequence MFE | -32.70 |
Consensus MFE | -16.70 |
Energy contribution | -17.07 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.33 |
Mean z-score | -2.12 |
Structure conservation index | 0.51 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.923389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3250368 109 + 23771897 UGUUUUGUUUUUCUUUUUUUC--CCUCCCCAUUUUGGCCCACUCGGAGUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU-GGGCGAA--AGA ...............((((((--...(((((((.(((((((..(.....).-.)))))))..((((.(((((.............)))))))))...)))).-))).)))--))) ( -30.22) >DroPse_CAF1 30068 93 + 1 UGGU-UGCUUUU-----UGG-------CCCGUUUCGU---------GGUGUGCUGGGCCAGGCGUGAGCCAAAUAACUUAUGGAAUUGGCCAUGGCCUGUAGAAGGCGAGAAGAA ....-..(((((-----(((-------((.(((((((---------(((.......))).(((....))).........))))))).))))...((((.....)))))))))).. ( -34.10) >DroSec_CAF1 29228 100 + 1 UGUUUUGUUU-------UUUC----CCCCCAUUUUGGCCCACUCAGAGUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU-GGGCGAA--AGA ........((-------((((----(((.((((.(((((((..(.....).-.)))))))..((((.(((((.............)))))))))...)))).-))).)))--))) ( -33.12) >DroSim_CAF1 32091 102 + 1 UGUUUUGUUUUU-----UUUC----CCCCCAUUUUGGCCCACUCAGAGUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU-GGGCGAA--AGA ..........((-----((((----(((.((((.(((((((..(.....).-.)))))))..((((.(((((.............)))))))))...)))).-))).)))--))) ( -33.12) >DroYak_CAF1 30598 106 + 1 UGUUUUGUUUUU-----UUUUCGUAUUCGUAUUUUGGCCCACUCAAAGUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU-GGGCGAA--GCA .(((((((((..-----..(((.......((((((((((((..(.....).-.))))))).((....)).)))))......)))((((((....))))))..-)))))))--)). ( -31.52) >DroPer_CAF1 30874 93 + 1 UGGU-UGCUUUU-----UGG-------CCCGUUUCGU---------GGUGUGCUGGGCCAGGCGUGAGCCAAAUAACUUAUGGAAUUGGCCAUGGCCUGUAGAAGGCGAGAAGAA ....-..(((((-----(((-------((.(((((((---------(((.......))).(((....))).........))))))).))))...((((.....)))))))))).. ( -34.10) >consensus UGUUUUGUUUUU_____UUUC_____CCCCAUUUUGGCCCACUCAGAGUGU_UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU_GGGCGAA__AGA ...(((((((...................((((((((.....)))))))).....(((((((.....(((((.............))))))))))))......)))))))..... (-16.70 = -17.07 + 0.37)
Location | 3,250,368 – 3,250,477 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 75.28 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -11.89 |
Energy contribution | -13.50 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.12 |
Mean z-score | -2.68 |
Structure conservation index | 0.43 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3250368 109 - 23771897 UCU--UUCGCCC-ACAUUGACCAUGGCCAAUUUCUUAAGUUAUUUGGCUCACGCAUGGCCCAA-ACACUCCGAGUGGGCCAAAAUGGGGAGG--GAAAAAAAGAAAAACAAAACA (((--(((.(((-(...((.....((((((.............))))))....))(((((((.-.(.....)..)))))))...))))))))--))................... ( -31.32) >DroPse_CAF1 30068 93 - 1 UUCUUCUCGCCUUCUACAGGCCAUGGCCAAUUCCAUAAGUUAUUUGGCUCACGCCUGGCCCAGCACACC---------ACGAAACGGG-------CCA-----AAAAGCA-ACCA ........((.......((((...((((((.............))))))...))))(((((........---------.......)))-------)).-----....)).-.... ( -24.08) >DroSec_CAF1 29228 100 - 1 UCU--UUCGCCC-ACAUUGACCAUGGCCAAUUUCUUAAGUUAUUUGGCUCACGCAUGGCCCAA-ACACUCUGAGUGGGCCAAAAUGGGGG----GAAA-------AAACAAAACA ..(--(((.(((-.((((......((((((.............))))))......(((((((.-.(.....)..))))))).))))))).----))))-------.......... ( -31.72) >DroSim_CAF1 32091 102 - 1 UCU--UUCGCCC-ACAUUGACCAUGGCCAAUUUCUUAAGUUAUUUGGCUCACGCAUGGCCCAA-ACACUCUGAGUGGGCCAAAAUGGGGG----GAAA-----AAAAACAAAACA ..(--(((.(((-.((((......((((((.............))))))......(((((((.-.(.....)..))))))).))))))).----))))-----............ ( -31.72) >DroYak_CAF1 30598 106 - 1 UGC--UUCGCCC-ACAUUGACCAUGGCCAAUUUCUUAAGUUAUUUGGCUCACGCAUGGCCCAA-ACACUUUGAGUGGGCCAAAAUACGAAUACGAAAA-----AAAAACAAAACA ...--((((...-....((.....((((((.............))))))....))(((((((.-.(.....)..)))))))...........))))..-----............ ( -21.82) >DroPer_CAF1 30874 93 - 1 UUCUUCUCGCCUUCUACAGGCCAUGGCCAAUUCCAUAAGUUAUUUGGCUCACGCCUGGCCCAGCACACC---------ACGAAACGGG-------CCA-----AAAAGCA-ACCA ........((.......((((...((((((.............))))))...))))(((((........---------.......)))-------)).-----....)).-.... ( -24.08) >consensus UCC__UUCGCCC_ACAUUGACCAUGGCCAAUUUCUUAAGUUAUUUGGCUCACGCAUGGCCCAA_ACACUCUGAGUGGGCCAAAAUGGGG_____GAAA_____AAAAACAAAACA .........(((............((((((.............))))))......(((((((............)))))))....)))........................... (-11.89 = -13.50 + 1.61)
Location | 3,250,406 – 3,250,506 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 74.30 |
Mean single sequence MFE | -23.57 |
Consensus MFE | -12.39 |
Energy contribution | -12.55 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.53 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3250406 100 + 23771897 ACUCGGAGUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU---GGGCGAAAGAGGAGG-------AAGACCAGCGAAAAAGGCAAACAA ........(((-(((((((..((....))..........((....)))))).(((((.....---...(....)......-------..)))))..........)))))). ( -25.29) >DroSec_CAF1 29257 80 + 1 ACUCAGAGUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU---GGGCGAAAGAGGAGG-------AAGA-------------------- .(((....(.(-((.(.((((((....))...............((((((....))))))))---)).).))).).))).-------....-------------------- ( -21.00) >DroSim_CAF1 32122 80 + 1 ACUCAGAGUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU---GGGCGAAAGAGGAGG-------AAGA-------------------- .(((....(.(-((.(.((((((....))...............((((((....))))))))---)).).))).).))).-------....-------------------- ( -21.00) >DroEre_CAF1 29736 90 + 1 -------GUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCACUGU---GGGCGAAGCAGCAGG-------AAGACCGGCGAAAGAGGCAA---C -------((.(-((..(((....(((.(((((.............))))))))((((.((((---..((...)).)))).-------..)))))))...))).))..---. ( -26.62) >DroYak_CAF1 30633 97 + 1 ACUCAAAGUGU-UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU---GGGCGAAGCAGAAGG-------AAGAGCAGCGAAAAAGGCAG---C ..((....(((-((.(.((((((....))...............((((((....))))))))---)).).)))))....)-------)...((.((.......)).)---) ( -24.00) >DroAna_CAF1 30465 97 + 1 ------AGUGUGUUGGGGCAUGCGUGAGCCAAAUAACUUAUAAAAUUGGCCAUGGUCGAAACAAAAGGCUAAA--GGAGGGCUCCCCAAAA------CAAAAGGCAAACUA ------..(((.((((((...(((((.(((((.............))))))))((((.........))))...--.....)).)))))).)------))............ ( -23.52) >consensus ACUCAGAGUGU_UUGGGCCAUGCGUGAGCCAAAUAACUUAAGAAAUUGGCCAUGGUCAAUGU___GGGCGAAAGAGGAGG_______AAGA______AAAAAGGCAA____ ...............(((((((.....(((((.............))))))))))))...................................................... (-12.39 = -12.55 + 0.17)
Location | 3,250,442 – 3,250,542 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 68.13 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -7.08 |
Energy contribution | -7.67 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.38 |
Mean z-score | -1.92 |
Structure conservation index | 0.34 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3250442 100 - 23771897 UGCACCUGCAAUUCCCCCAGUUGGCCGGCCAGGUGUUUGUUUGCCUUUUUCGCUGGUCUUCCUCCUCU--UUCGCCC-ACAUUGACCAUGGCCAAUUUCUUAA (((....)))........(((((((((((.(((((......))))).....)))((((..........--.......-.....))))..))))))))...... ( -22.85) >DroPse_CAF1 30123 89 - 1 UGC-CUUCCAAUUCUUUCACUUGGCCAGCUGUGUG----UUGGCCACGUUC---------CCUCUUUCUUCUCGCCUUCUACAGGCCAUGGCCAAUUCCAUAA .((-(.............((.((((((((.....)----))))))).))..---------.............((((.....))))...)))........... ( -23.20) >DroSec_CAF1 29293 79 - 1 UGCACCUGCAAUUCCCCCAGUUGGCCUGCCAGGUG---------------------UCUUCCUCCUCU--UUCGCCC-ACAUUGACCAUGGCCAAUUUCUUAA (((....)))........((((((((((...((((---------------------(...........--.......-)))))...)).))))))))...... ( -14.87) >DroSim_CAF1 32158 79 - 1 UGCACCUGCAAUUCCCCCAGUUGGCCUGCCAGGUG---------------------UCUUCCUCCUCU--UUCGCCC-ACAUUGACCAUGGCCAAUUUCUUAA (((....)))........((((((((((...((((---------------------(...........--.......-)))))...)).))))))))...... ( -14.87) >DroEre_CAF1 29765 85 - 1 ------------UUGGCCAGCCUGGUAGCCAGGUGUG---UUGCCUCUUUCGCCGGUCUUCCUGCUGC--UUCGCCC-ACAGUGACCAUGGCCAAUUUCUUAA ------------(((((((((((((...))))))...---..............((((...(((..((--...))..-.))).)))).)))))))........ ( -26.80) >DroYak_CAF1 30669 97 - 1 UGCACCUGCAAUUCCCCCAGUUGGCCAGCCAGGUGUG---CUGCCUUUUUCGCUGCUCUUCCUUCUGC--UUCGCCC-ACAUUGACCAUGGCCAAUUUCUUAA (((....)))........(((((((((..((((((.(---(.((.......)).((..........))--...)).)-)).)))....)))))))))...... ( -21.20) >consensus UGCACCUGCAAUUCCCCCAGUUGGCCAGCCAGGUG_____UUGCCU_UUUC_____UCUUCCUCCUCC__UUCGCCC_ACAUUGACCAUGGCCAAUUUCUUAA ..................(((((((((....((((............................................)))).....)))))))))...... ( -7.08 = -7.67 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:19 2006