Locus 1110

Sequence ID 3L_DroMel_CAF1
Location 3,242,758 – 3,242,868
Length 110
Max. P 0.522033
window1716

overview

Window 6

Location 3,242,758 – 3,242,868
Length 110
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 71.49
Mean single sequence MFE -17.66
Consensus MFE -6.89
Energy contribution -7.57
Covariance contribution 0.68
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.39
SVM decision value -0.02
SVM RNA-class probability 0.522033
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3242758 110 + 23771897
GGGCUCUAAAAGUUCU--------CUAAACUGGGUGAAUCUACCAUUAUCAUAAACUAAUUGGCAUACCCAUUCAUAUCUCAACUACUUUUAGGCUAAUUGGAACGCUAACCAAUAUU
.(((.((((((((...--------......((((((......((((((........))).)))......))))))..........))))))))))).(((((........)))))... ( -19.51)
>DroSec_CAF1 21751 110 + 1
GGGCUCUAAAAGUUCU--------CUAAACUGGGUGAAUCUACCAUUAUCAUAAACUAAUUGUCAUACCCAUCCAUAUCUCAACUACUUUUAUGCUAAUUGGAACGCUAACCAAUAUU
.(((..(((((((...--------......((((((.....((.((((........)))).))......))))))..........))))))).))).(((((........)))))... ( -16.61)
>DroSim_CAF1 22272 85 + 1
GGGCUCUAAAAGUUCU---------------------------------CAUAAACUAAUUGGCAUACCCAUCCAUAUCUCAACUACUUUUAGGCUAAUUGGAACGCUAACCAAUAUU
.(((.((((((((...---------------------------------...........(((.....)))..............))))))))))).(((((........)))))... ( -16.29)
>DroEre_CAF1 21848 106 + 1
GGGCUAUAAAAGUUCUAGGUUUAUCCAAACUGGGUA------------ACAUACACUAAUUGGCAUGCUCAUCCAUAACUUUACUGCUCUUAGGCUAAUUGGAACGCUAACCAAUAUU
(((((.....)))))..(((((((((.....)))))------------.......(((((((((..((.................))......)))))))))......))))...... ( -20.33)
>DroYak_CAF1 22423 92 + 1
GCGUUCUAUAAGUUUAAG---CAUCCAAACU-----------------------ACUACUAUAAAUAAGCAGCCAUAACUUCACUACUUUUAGGCAAAUUGGAACGCUAACCAAUAUU
((((((((..(((((...---.....)))))-----------------------.................(((..................)))....))))))))........... ( -15.57)
>consensus
GGGCUCUAAAAGUUCU________CCAAACUGGGU______________CAUAAACUAAUUGGCAUACCCAUCCAUAUCUCAACUACUUUUAGGCUAAUUGGAACGCUAACCAAUAUU
.(((.((((((((........................................................................))))))))))).(((((........)))))... ( -6.89 =  -7.57 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:14 2006