Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 379,023 – 379,116 |
Length | 93 |
Max. P | 0.998659 |
Location | 379,023 – 379,116 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 95.05 |
Mean single sequence MFE | -22.62 |
Consensus MFE | -20.88 |
Energy contribution | -21.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -2.07 |
Structure conservation index | 0.92 |
SVM decision value | 3.18 |
SVM RNA-class probability | 0.998659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 379023 93 - 23771897 GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAUAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGGUUUAAGCUAU ..((((.........))))(((((...)))))...........(((...(.....)(((((((((............)))))))))..))).. ( -22.20) >DroSec_CAF1 33137 93 - 1 GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAUAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGGUUUAAGCCAA ..((((.........))))(((((...)))))...........(((...(.....)(((((((((............)))))))))..))).. ( -24.80) >DroSim_CAF1 33872 93 - 1 GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAUAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGGUUUAAGCCAA ..((((.........))))(((((...)))))...........(((...(.....)(((((((((............)))))))))..))).. ( -24.80) >DroEre_CAF1 34506 93 - 1 GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAACAGAGGGGCAUCGAAAAACAAGCCUGCGUUCACAACAAUUUGUAGGUUCAAGCCAU ..((((.........))))(((((...)))))...........(((...(.....).((((((((............))))))))...))).. ( -23.10) >DroYak_CAF1 34962 93 - 1 GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAAAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGCUUUGAACUAU ((((((.........))))(((((...)))))............)).........((((.(((((............))))).))))...... ( -18.20) >consensus GUGUGCUAUUUAAAUGCACGGCAGCAACUGCCAAAAUAAGAGAGGCAUCGAAAAACAAACCUGCGUUCACAACAAUUUGUAGGUUUAAGCCAU ..((((.........))))(((((...)))))...........(((...(.....)(((((((((............)))))))))..))).. (-20.88 = -21.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:44 2006