| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,239,992 – 3,240,110 |
| Length | 118 |
| Max. P | 0.610698 |
| Location | 3,239,992 – 3,240,110 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.71 |
| Mean single sequence MFE | -26.71 |
| Consensus MFE | -16.74 |
| Energy contribution | -17.36 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3239992 118 + 23771897 CAGCCAAUCUGUAUAUGUAUCUGUGUGUAUAUAUCUGGCUGAUAGUCCAUCAAGUGGGUGCUCAAUAAGUCAUUUAAUUAGCUAAUCAAUCAGUCAUCCAGUCACUGGACUUGGGCUC ((((((...((((((..((....))..))))))..))))))..((((((..((((((.(........).)))))).....................(((((...)))))..)))))). ( -29.30) >DroEre_CAF1 19050 93 + 1 CAGUCAGGCUGU------------------GCAUCUGACUGAUAGUCCAUCAAGUGGGUGCUCAAUAAGUCAUUUAAUUAGCUAAUCAAUCAGUCAUCCAGCCAGU-GACUU------ .((((((((((.------------------....((((.(((((((..((.((((((.(........).)))))).))..))).)))).)))).....)))))..)-)))).------ ( -26.90) >DroYak_CAF1 19474 105 + 1 CAGCCAAGUUGUAUAC------------AUACAUCUGGCUGAUAGUCCAUCAAGUGGGUGCUCAAUAAGUCAUUUAAUUAGCUAAUCAAUCAGUCAUCCAGUUCGU-GAAUUGUGCUC ((((((.(.((((...------------.)))).)))))))(((((.(((.((.((((((((.....((..(......)..))........)).)))))).)).))-).))))).... ( -23.92) >consensus CAGCCAAGCUGUAUA_____________AUACAUCUGGCUGAUAGUCCAUCAAGUGGGUGCUCAAUAAGUCAUUUAAUUAGCUAAUCAAUCAGUCAUCCAGUCAGU_GACUUG_GCUC ((((((...((((((((........))))))))..))))))..((((.......((((((((.....((..(......)..))........)).)))))).......))))....... (-16.74 = -17.36 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:13 2006