Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,237,737 – 3,237,827 |
Length | 90 |
Max. P | 0.857114 |
Location | 3,237,737 – 3,237,827 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.29 |
Mean single sequence MFE | -20.94 |
Consensus MFE | -20.52 |
Energy contribution | -20.56 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.20 |
Structure conservation index | 0.98 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3237737 90 + 23771897 CUUGUGAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUUUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGCCCGACC-A ...(..(((((.((((..........((((((....))))))((.(((.(((.......))).))).))))))..)))))..)......-. ( -21.40) >DroSec_CAF1 16726 91 + 1 CUUGUGAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUAUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGCCCGACCAA ...(((((((...(((....)))...((((((....))))))..))))))).......(((.(((((..........))))).)))..... ( -19.90) >DroSim_CAF1 17266 91 + 1 CUUGUGAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUAUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGCCCGACCAA ...(((((((...(((....)))...((((((....))))))..))))))).......(((.(((((..........))))).)))..... ( -19.90) >DroEre_CAF1 16871 83 + 1 CUUGUAAAUAGCUGGCACCUGCUGAAGUGGAACAAUUACCACGAUUUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGC-------- ...((((((((.((((..........((((........))))((.(((.(((.......))).))).))))))..))))))))-------- ( -21.60) >DroYak_CAF1 17165 91 + 1 CUUGUAAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUUUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUACCCGGCCAA ...((((((((.((((..........((((((....))))))((.(((.(((.......))).))).))))))..))))))))........ ( -21.90) >consensus CUUGUGAAUAGCUGGCACCUGCUGAAGUGGAACAAUUUUCACGAUUUUCGCUUUAAAACGGCCAAAUUCGCCACUCUGUUUGCCCGACCAA ...((((((((.((((..........((((((....))))))((.(((.(((.......))).))).))))))..))))))))........ (-20.52 = -20.56 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:12 2006