Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,232,535 – 3,232,638 |
Length | 103 |
Max. P | 0.722017 |
Location | 3,232,535 – 3,232,638 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 72.71 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -19.48 |
Energy contribution | -19.60 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.25 |
Mean z-score | -1.63 |
Structure conservation index | 0.61 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3232535 103 + 23771897 UGGUUUAUAAUAAAUAAGCAACCUAAUGCGU-AAGAUCCCACAAUCUUGACCGCUACUGUGAAAAGGGGGGGAUCUGCGUGAGUGUGCGUGUAUGUG-------------G-GGAGAG- ..((((((.....))))))..((((((((((-((((((((....((((...(((....)))..))))..)))))))((....)).)))))))...))-------------)-).....- ( -31.40) >DroSec_CAF1 11759 107 + 1 AGGUAUAUAAUAAAAAAGCAACCUAAUGCGU-AAGAUCCCACAAUCUUGACCGCCAUUGUGGAAAGAG-GGGAUCUGCGUGAGUGUGCGUGCCUGUGUGU---------GAAGAAGGG- ((((((...........(((..((...((((-(.((((((....((((..((((....)))).)))).-))))))))))).))..)))))))))......---------.........- ( -32.30) >DroSim_CAF1 11892 107 + 1 UGGUAUAUAAUAAAUAAGCAACCUAAAGCGU-AAGAUCCCACAAUCUUGACCGCCAUUGUGGAAAGAG-GGGAUCUGCGUGAGUGUGCGUGCGUGUGUGU---------GGAGAAGGG- ...((((((........(((..((...((((-(.((((((....((((..((((....)))).)))).-))))))))))).))..))).......)))))---------)........- ( -32.76) >DroEre_CAF1 11771 107 + 1 UGUUUU---------AUGCAGUU--UUGAGUUGCGGUCCCACGAUCUUGGCUGUCAUUGUGGAGAGAA-GAGAUCUGCGUCAGUGUGCGCGCGUGUGUGUUGGCUGGAGGGGGGAGGGG ......---------.(((((..--.....))))).((((..((((((..((.((......)).))..-))))))..(..((((..(((((....)))))..))))..)..)))).... ( -32.10) >consensus UGGUAUAUAAUAAAUAAGCAACCUAAUGCGU_AAGAUCCCACAAUCUUGACCGCCAUUGUGGAAAGAG_GGGAUCUGCGUGAGUGUGCGUGCGUGUGUGU_________GGAGAAGGG_ .................(((..((...((((..(((((((....((((..((((....)))).))))..))))))))))).))..)))............................... (-19.48 = -19.60 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:08 2006