Locus 1105

Sequence ID 3L_DroMel_CAF1
Location 3,232,535 – 3,232,638
Length 103
Max. P 0.722017
window1709

overview

Window 9

Location 3,232,535 – 3,232,638
Length 103
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 72.71
Mean single sequence MFE -32.14
Consensus MFE -19.48
Energy contribution -19.60
Covariance contribution 0.12
Combinations/Pair 1.25
Mean z-score -1.63
Structure conservation index 0.61
SVM decision value 0.40
SVM RNA-class probability 0.722017
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3232535 103 + 23771897
UGGUUUAUAAUAAAUAAGCAACCUAAUGCGU-AAGAUCCCACAAUCUUGACCGCUACUGUGAAAAGGGGGGGAUCUGCGUGAGUGUGCGUGUAUGUG-------------G-GGAGAG-
..((((((.....))))))..((((((((((-((((((((....((((...(((....)))..))))..)))))))((....)).)))))))...))-------------)-).....- ( -31.40)
>DroSec_CAF1 11759 107 + 1
AGGUAUAUAAUAAAAAAGCAACCUAAUGCGU-AAGAUCCCACAAUCUUGACCGCCAUUGUGGAAAGAG-GGGAUCUGCGUGAGUGUGCGUGCCUGUGUGU---------GAAGAAGGG-
((((((...........(((..((...((((-(.((((((....((((..((((....)))).)))).-))))))))))).))..)))))))))......---------.........- ( -32.30)
>DroSim_CAF1 11892 107 + 1
UGGUAUAUAAUAAAUAAGCAACCUAAAGCGU-AAGAUCCCACAAUCUUGACCGCCAUUGUGGAAAGAG-GGGAUCUGCGUGAGUGUGCGUGCGUGUGUGU---------GGAGAAGGG-
...((((((........(((..((...((((-(.((((((....((((..((((....)))).)))).-))))))))))).))..))).......)))))---------)........- ( -32.76)
>DroEre_CAF1 11771 107 + 1
UGUUUU---------AUGCAGUU--UUGAGUUGCGGUCCCACGAUCUUGGCUGUCAUUGUGGAGAGAA-GAGAUCUGCGUCAGUGUGCGCGCGUGUGUGUUGGCUGGAGGGGGGAGGGG
......---------.(((((..--.....))))).((((..((((((..((.((......)).))..-))))))..(..((((..(((((....)))))..))))..)..)))).... ( -32.10)
>consensus
UGGUAUAUAAUAAAUAAGCAACCUAAUGCGU_AAGAUCCCACAAUCUUGACCGCCAUUGUGGAAAGAG_GGGAUCUGCGUGAGUGUGCGUGCGUGUGUGU_________GGAGAAGGG_
.................(((..((...((((..(((((((....((((..((((....)))).))))..))))))))))).))..)))............................... (-19.48 = -19.60 +   0.12) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:08 2006