Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,229,694 – 3,229,790 |
Length | 96 |
Max. P | 0.554549 |
Location | 3,229,694 – 3,229,790 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -14.92 |
Consensus MFE | -7.76 |
Energy contribution | -7.72 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.29 |
Mean z-score | -1.96 |
Structure conservation index | 0.52 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3229694 96 - 23771897 AACAACAG-C--GGCAAAGCCAAAAA--AAGAAAAACAGGCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGCUGGCAGCCAAAAAAACCU ........-.--(((...((((....--..........((((..((((....))))..)))).........(((.....))).)))).))).......... ( -16.40) >DroSec_CAF1 8985 91 - 1 AACAACAG-C--GGCUAAGCCAAAAA------AAAGCAGGCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGCUGGCAGCCAAA-AAACGU ........-.--((((..((((....------..((((...((((.....))))....)))).........(((.....))).))))))))...-...... ( -18.90) >DroSim_CAF1 9098 91 - 1 AACAACAG-C--GGCUAAGCCAAAAA------AAAGCAGGCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGCUGGCAGCCAAA-AAACCU ........-.--((((..((((....------..((((...((((.....))))....)))).........(((.....))).))))))))...-...... ( -18.90) >DroYak_CAF1 9062 85 - 1 AACAACAAAC--AACAGAGCUU------------AGCA-GCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGUUGGCAGCCCAA-AAACCU ..........--....(.((((------------((((-..((((.....))))....)))))..(((((((.......))))))).))).)..-...... ( -13.10) >DroAna_CAF1 9872 94 - 1 -ACACCAG-CUAAGCUAAGCCAAAAACCAAAAAAAAAAGAUACAGAAUUAUUGUUUAAUGCUAAUUUAACACACUUCAAAUGC-GGUAUCCAAA-AA-U-- -..(((.(-((......)))........................(((....((((.(((....))).))))...)))......-))).......-..-.-- ( -7.30) >consensus AACAACAG_C__GGCUAAGCCAAAAA______AAAGCAGGCACAAAAUUAUUGUUUAAUGCUAAUUUAACACACGUCAAGUGCUGGCAGCCAAA_AAACCU ..................(((.................((((..((((....))))..)))).........(((.....)))..))).............. ( -7.76 = -7.72 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:05 2006