Locus 1101

Sequence ID 3L_DroMel_CAF1
Location 3,219,585 – 3,219,677
Length 92
Max. P 0.762361
window1704

overview

Window 4

Location 3,219,585 – 3,219,677
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 94.59
Mean single sequence MFE -15.85
Consensus MFE -13.56
Energy contribution -13.75
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -1.74
Structure conservation index 0.86
SVM decision value 0.51
SVM RNA-class probability 0.762361
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3219585 92 + 23771897
CUA---AGAAAUACAAUAUCCCUCUAUGCAGCAAGCGAAAGCAAAACCAACAGCAGUUAUACAUAAUUGAAUGUGUAAUAUGAUGGCAAAAAUAU
...---....................(((.....((....))........((.(((((((((((......))))))))).)).)))))....... ( -16.30)
>DroSec_CAF1 15380 95 + 1
CUAUAAAGAAAUACAAUAUCCCUCUAUGCAGCAAGCGAAAGCGAAACCAACAGCAGUUAUACAUAAUUGAAUGUGUAAUAUGAUGGCAAACAUAU
........................((((......((....))....(((.((...(((((((((......))))))))).)).)))....)))). ( -16.70)
>DroSim_CAF1 15544 95 + 1
CUAUAAAGAAAUACAAUAUCCCUCUAUGCAGCAAGCGAAAGCGAAACCAACAGCAGUUAUACAUAAUUGAAUGUGUAAUAUGAUGGCAAACAUAU
........................((((......((....))....(((.((...(((((((((......))))))))).)).)))....)))). ( -16.70)
>DroEre_CAF1 15097 89 + 1
CUAUAAAGAAAUACAAUAUCCCUCUAUGCAGCAAGCGA------AACCAACAGCAGUUAUACAUAAUUGAAUGUGUAAUAUGAUGGCAAACAUAU
..........................(((.....))).------..(((.((...(((((((((......))))))))).)).)))......... ( -12.10)
>DroYak_CAF1 14955 95 + 1
CUAUAAAGAAAUACAAUAUCCCUCUAUGCAGCAAGCGAAAGCAAAACCAACAGCAGUUAUACAUAAUUGAAUGUGUAAUAUGAUGGCAAACAUAU
........................((((......((....))....(((.((...(((((((((......))))))))).)).)))....)))). ( -16.70)
>DroAna_CAF1 15667 94 + 1
CUAUAAAGAAAUACAAUAUCCCUCUAUGAAGCAAGCGAAAGCA-AACCGACAGCAGUUAUACAUAAUUGAAUGUGUAAUAUGAUGGCAUAAAUAU
........................((((......((....)).-..(((.((...(((((((((......))))))))).)).)))))))..... ( -16.60)
>consensus
CUAUAAAGAAAUACAAUAUCCCUCUAUGCAGCAAGCGAAAGCAAAACCAACAGCAGUUAUACAUAAUUGAAUGUGUAAUAUGAUGGCAAACAUAU
..................................((....))....(((.((...(((((((((......))))))))).)).)))......... (-13.56 = -13.75 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:03 2006