| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 378,283 – 378,381 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 378,283 – 378,381 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 85.29 |
| Mean single sequence MFE | -24.93 |
| Consensus MFE | -20.25 |
| Energy contribution | -19.75 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.08 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 378283 98 - 23771897 ACAUCACGUGCCGCAGGACGACGGCAAGUGUGCU-CCACCUCCAUCUCCGGCUCAAGUUUUGUGUACUUUUUAGCACAUAUUCCCGACUUGAAGCCUCU .((.(((.(((((........))))).)))))..-..............((((((((((.(((((.((....)).))))).....)))))).))))... ( -27.00) >DroVir_CAF1 35633 96 - 1 ACAUCACGUGCCACGAGACGCUGGCAAAGUUCC--CAGCAAAUAUCCCAUCGAGAAGUUUUGUGUACUUUUUAGCACAUAUUUCGAGUUUGUCUA-CGC .............(((((((((((........)--))))..........((((((.....(((((........)))))..))))))....)))).-)). ( -22.80) >DroSec_CAF1 32409 98 - 1 ACAUCACGUGCCGCAGGACGACGGCAAGUAUGCC-CCACCUCCAUCUCCGGCUCAAGUUUUGUGUACUUUUUAGCACAUAUUCCCGACUUGAAGCCUCU .(((.((.(((((........))))).)))))..-..............((((((((((.(((((.((....)).))))).....)))))).))))... ( -25.10) >DroSim_CAF1 33144 98 - 1 ACAUCACGUGCCGCAGGACGACGGCAAGUAUGCC-CCACCUCCAUCUCCGGCUCAAGUUUUGUGUACUUUUUAGCACAUAUUCCCGACUUGAAGCCUGU .(((.((.(((((........))))).)))))..-..............((((((((((.(((((.((....)).))))).....)))))).))))... ( -25.10) >DroEre_CAF1 33792 99 - 1 ACAUCACGUGCCGCAGAACGACGGCAAGUUUGCCACCACCACCAUCUCCGGCUCAAGUUUUGUGUACUUUUUAGCACAUAUUCCCGACUUGAAGCCUCU .....((.(((((........))))).))....................((((((((((.(((((.((....)).))))).....)))))).))))... ( -23.40) >DroYak_CAF1 34254 98 - 1 ACAUCACGUGCCGCAGGACGACGGCAAGUAUGCC-CCACCUCCAUCUCCGGCUCAAGUUUUGUGUACUUUCUAGCACAUAUUCCGAACUUGAAGCCUCU .(((.((.(((((........))))).)))))..-..............((((((((((((((((........)))))......))))))).))))... ( -26.20) >consensus ACAUCACGUGCCGCAGGACGACGGCAAGUAUGCC_CCACCUCCAUCUCCGGCUCAAGUUUUGUGUACUUUUUAGCACAUAUUCCCGACUUGAAGCCUCU .....((.((((((.....).))))).))....................((((((((((.(((((.((....)).))))).....))))))).)))... (-20.25 = -19.75 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:43 2006