| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 43,947 – 44,062 |
| Length | 115 |
| Max. P | 0.889758 |
| Location | 43,947 – 44,062 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 91.25 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -18.47 |
| Energy contribution | -18.03 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.46 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 43947 115 - 23771897 UCACUUCUACUUCUGCUUCUCUUCCUACUCUUAACUUUCUGGUUUAUUUUUCGCCAGCAAGGCAAUUAAAUUUUAUUGCUU-UGCUGGCCUGGCCAAACAUAACAAACAGAAAACA ...................................((((((...........((((((((((((((........)))))))-))))))).((......)).......))))))... ( -29.10) >DroSec_CAF1 34041 112 - 1 UCACUUCAACUUCUAUUUCUCUUCCUACUC----CUUUAUGGUUUAUUUUUCGUCAGCAAGGCAAUCAAAUUUUAUGGCCUUUGCUGGCCUGGCCAAACAUAAUAAACAGAAAACA ...............(((((.......(..----......)(((((((....(((((((((((..............))).)))))))).((......)).))))))))))))... ( -19.14) >DroSim_CAF1 35722 111 - 1 UCACUUCAACUUCUAUUUCUCUUCCCACUC----CUUUAUGGUUUAUUUUUCGUCAGCAAGGCAAUCAAAUUUUAUGGCCU-UGCUGGCCUGGCCAAACAUAAUAAACAGAAAACA ...............(((((.......(..----......)(((((((....(((((((((((..............))))-))))))).((......)).))))))))))))... ( -22.94) >consensus UCACUUCAACUUCUAUUUCUCUUCCUACUC____CUUUAUGGUUUAUUUUUCGUCAGCAAGGCAAUCAAAUUUUAUGGCCU_UGCUGGCCUGGCCAAACAUAAUAAACAGAAAACA .........................................((((.......(((((((((((..............)))).)))))))(((...............))).)))). (-18.47 = -18.03 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:50 2006