Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,212,141 – 3,212,287 |
Length | 146 |
Max. P | 0.968804 |
Location | 3,212,141 – 3,212,247 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 72.60 |
Mean single sequence MFE | -38.02 |
Consensus MFE | -11.72 |
Energy contribution | -13.11 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.35 |
Mean z-score | -2.06 |
Structure conservation index | 0.31 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3212141 106 + 23771897 GUUUGUUUACAGCCGAUUCCGCAGAAUCAAUUCUACCCUGGAUUGGUGGCUGGUCCCUGGCCGCCUGGCACUGUAG---CAGCUACUACCGCCCAUGGGCAAAACUUCU ....((((...((((((((....)))))(((((......)))))((((((..(...)..)))))).)))...((((---......)))).(((....))).)))).... ( -33.80) >DroGri_CAF1 10346 105 + 1 UU----CUGCAGCCCAUUCAGCAGCAGCCGUUCUACGCCGGCCUGAUGGCUGCCCCUUGGCAGACGACUGCUGCUGUGGCAGCCACAGCGGCGCAUGGCCAAAACUUCU ..----..((((((...((((.....((((........)))))))).))))))...(((((.......(((((((((((...)))))))))))....)))))....... ( -43.70) >DroEre_CAF1 7631 106 + 1 GUUUGCUUACAGCCGAUUCCGCAGAAUCAAUUUUACCCCGGCUUGGUGGCUGGACCCUGGCCGCCUGGCACUGUAG---CAGCCACUGCCGCCCAUGGGCAAAAUUUCU (.(((((.((((..(((((....)))))............(((.((((((..(...)..)))))).))).))))))---))).)......(((....)))......... ( -37.70) >DroYak_CAF1 7483 106 + 1 GUUUGUUUACAGCCGAUUCCGCAGAAUCAAUUUUACCCCGGCUUGGUGGCUGGACCCUGGCCGCCUGGCACUGUAG---CAGCCACUGCCGCCCAUGGGCAAAACUUUU ((((...(((((..(((((....)))))............(((.((((((..(...)..)))))).))).)))))(---(((...)))).(((....))).)))).... ( -36.80) >DroMoj_CAF1 7786 109 + 1 AUCUCUUCGCAGCCCUUUCAGCAGCAACAAUUCUAUACAGGGCUGAUGGCUGCUCCGUGGCAACCGACCACCGUAGCAGCAGCCACAGCGGCGCAGGGCCAAAAUUUUU ...........(((((....((.((......(((....)))((((.(((((((((.(((((....).)))).)....)))))))))))).))))))))).......... ( -35.10) >DroAna_CAF1 7543 99 + 1 -------CUUAGCCGAUUCAGCAAAAUCAGUUCUAUCCCAGCAUUGUGGCUGGGCCAUGGCCACCGGGAACAGUGG---CAACCACUGCCCCGCAUGGCCAGAACUUCU -------.......((((......))))((((((..((((((......))))))....(((((.((((..((((((---...)))))).))))..)))))))))))... ( -41.00) >consensus GUUUGUUUACAGCCGAUUCAGCAGAAUCAAUUCUACCCCGGCUUGGUGGCUGGACCCUGGCCGCCGGGCACUGUAG___CAGCCACUGCCGCCCAUGGCCAAAACUUCU ...........((((.....((((........((((....((..(((((((((...)))))))))..))...)))).........))))......))).)......... (-11.72 = -13.11 + 1.39)
Location | 3,212,141 – 3,212,247 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 72.60 |
Mean single sequence MFE | -43.17 |
Consensus MFE | -17.91 |
Energy contribution | -17.27 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.48 |
Mean z-score | -2.37 |
Structure conservation index | 0.41 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968804 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3212141 106 - 23771897 AGAAGUUUUGCCCAUGGGCGGUAGUAGCUG---CUACAGUGCCAGGCGGCCAGGGACCAGCCACCAAUCCAGGGUAGAAUUGAUUCUGCGGAAUCGGCUGUAAACAAAC ...((((((((((.(((((.(((((....)---))))...))).((.(((..(....).))).))....))))))))))))(((((....))))).............. ( -34.80) >DroGri_CAF1 10346 105 - 1 AGAAGUUUUGGCCAUGCGCCGCUGUGGCUGCCACAGCAGCAGUCGUCUGCCAAGGGGCAGCCAUCAGGCCGGCGUAGAACGGCUGCUGCUGAAUGGGCUGCAG----AA .........(((.....))).(((..((..(((((((((((((((((((((....))).(((........)))..)).)))))))))))))..)))))..)))----.. ( -49.50) >DroEre_CAF1 7631 106 - 1 AGAAAUUUUGCCCAUGGGCGGCAGUGGCUG---CUACAGUGCCAGGCGGCCAGGGUCCAGCCACCAAGCCGGGGUAAAAUUGAUUCUGCGGAAUCGGCUGUAAGCAAAC ...((((((((((...(((((((.((....---...)).)))).((.(((..(....).))).))..))).))))))))))(((((....))))).((.....)).... ( -40.90) >DroYak_CAF1 7483 106 - 1 AAAAGUUUUGCCCAUGGGCGGCAGUGGCUG---CUACAGUGCCAGGCGGCCAGGGUCCAGCCACCAAGCCGGGGUAAAAUUGAUUCUGCGGAAUCGGCUGUAAACAAAC ...((((((((((...(((((((.((....---...)).)))).((.(((..(....).))).))..))).))))))))))(((((....))))).............. ( -39.70) >DroMoj_CAF1 7786 109 - 1 AAAAAUUUUGGCCCUGCGCCGCUGUGGCUGCUGCUACGGUGGUCGGUUGCCACGGAGCAGCCAUCAGCCCUGUAUAGAAUUGUUGCUGCUGAAAGGGCUGCGAAGAGAU ........((((.(((.(((((((((((....))))))))))))))..))))....((((((.(((((...(((.........))).)))))...))))))........ ( -46.40) >DroAna_CAF1 7543 99 - 1 AGAAGUUCUGGCCAUGCGGGGCAGUGGUUG---CCACUGUUCCCGGUGGCCAUGGCCCAGCCACAAUGCUGGGAUAGAACUGAUUUUGCUGAAUCGGCUAAG------- ...((((((((((((.(((((((((((...---)))))).)))))))))))....((((((......))))))..))))))(((((....))))).......------- ( -47.70) >consensus AGAAGUUUUGCCCAUGCGCGGCAGUGGCUG___CUACAGUGCCAGGCGGCCAGGGACCAGCCACCAAGCCGGGGUAGAAUUGAUUCUGCGGAAUCGGCUGUAAACAAAC ...........((.((.((.((....((((......)))).....)).)))).))..(((((.......((((((.......)))))).......)))))......... (-17.91 = -17.27 + -0.63)
Location | 3,212,170 – 3,212,287 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.52 |
Mean single sequence MFE | -44.72 |
Consensus MFE | -11.92 |
Energy contribution | -13.90 |
Covariance contribution | 1.97 |
Combinations/Pair | 1.26 |
Mean z-score | -2.61 |
Structure conservation index | 0.27 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3212170 117 + 23771897 AUUCUACCCUGGAUUGGUGGCUGGUCCCUGGCCGCCUGGCACUGUAG---CAGCUACUACCGCCCAUGGGCAAAACUUCUACGAGCUCGGAGGAAACAUAUUUACCACCAAUCCUUUACC ..........((((((((((..(((.....))).((.(((...((((---......)))).(((....))).............))).)).(....).......))))))))))...... ( -37.50) >DroPse_CAF1 27234 114 + 1 AUUCUAUCCCGGCUUGAUGGCUGGUCCAUGGCCACCCGGCACUGUGA------CCGCUGCCGGCCACGGCCAGAACUUCUAUGAGAUUGGUGGCAACAUCUAUGCCACCAAUCCGUUGGC ........((((((....)))))).((((((((..((((((.((...------.)).))))))....)))))........(((.(((((((((((.......))))))))))))))))). ( -48.70) >DroGri_CAF1 10371 120 + 1 GUUCUACGCCGGCCUGAUGGCUGCCCCUUGGCAGACGACUGCUGCUGUGGCAGCCACAGCGGCGCAUGGCCAAAACUUCUAUGAGAUUGGUGGCAAUAUAUUUGCAACCAAUGGGCUAGC .......((((..(((.(((((((((..((((((....))))))..).)))))))))))))))((.(((((....(((....)))((((((.((((.....)))).)))))).))))))) ( -52.50) >DroEre_CAF1 7660 117 + 1 AUUUUACCCCGGCUUGGUGGCUGGACCCUGGCCGCCUGGCACUGUAG---CAGCCACUGCCGCCCAUGGGCAAAAUUUCUACGACCUGGGAGGAAACAUCUUUACCACCAAUCCUUUAGC ..........((.(((((((..((((((.((.((...((((.((...---....)).))))(((....)))..........)).)).))).(....).)))...))))))).))...... ( -38.60) >DroYak_CAF1 7512 117 + 1 AUUUUACCCCGGCUUGGUGGCUGGACCCUGGCCGCCUGGCACUGUAG---CAGCCACUGCCGCCCAUGGGCAAAACUUUUACGAGCUCGGAGGAAACAUCUUUACCACCAAUCCUUUGGC ......(((((((((((((((((.((....(((....)))...))..---)))))))....(((....)))..........))))).))).))..............((((....)))). ( -41.30) >DroMoj_CAF1 7815 120 + 1 AUUCUAUACAGGGCUGAUGGCUGCUCCGUGGCAACCGACCACCGUAGCAGCAGCCACAGCGGCGCAGGGCCAAAAUUUUUAUGAAUUUGGUGGCAAUAUAUUUGCUGCCAAUGGCCUGGC ............((((.(((((((((.(((((....).)))).)....))))))))))))...((.((((((((((((....))))))((..((((.....))))..))..)))))).)) ( -49.70) >consensus AUUCUACCCCGGCUUGAUGGCUGGUCCCUGGCCGCCUGGCACUGUAG___CAGCCACUGCCGCCCAUGGCCAAAACUUCUACGAGCUUGGAGGAAACAUAUUUACCACCAAUCCUUUAGC ..........(((....((((((.......(((....)))..........))))))..)))(((....))).................((.((...........)).))........... (-11.92 = -13.90 + 1.97)
Location | 3,212,170 – 3,212,287 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.52 |
Mean single sequence MFE | -46.62 |
Consensus MFE | -18.11 |
Energy contribution | -19.78 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.38 |
Mean z-score | -2.32 |
Structure conservation index | 0.39 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3212170 117 - 23771897 GGUAAAGGAUUGGUGGUAAAUAUGUUUCCUCCGAGCUCGUAGAAGUUUUGCCCAUGGGCGGUAGUAGCUG---CUACAGUGCCAGGCGGCCAGGGACCAGCCACCAAUCCAGGGUAGAAU ......(((((((((((.....((.((((((((.((.(((((.(((((((((....)))))....)))).---)))).).))....)))..))))).))))))))))))).......... ( -42.80) >DroPse_CAF1 27234 114 - 1 GCCAACGGAUUGGUGGCAUAGAUGUUGCCACCAAUCUCAUAGAAGUUCUGGCCGUGGCCGGCAGCGG------UCACAGUGCCGGGUGGCCAUGGACCAGCCAUCAAGCCGGGAUAGAAU ......((((((((((((.......)))))))))))).......((((((((.(((((((....)))------))))......((.((((....).))).)).....))))))))..... ( -51.80) >DroGri_CAF1 10371 120 - 1 GCUAGCCCAUUGGUUGCAAAUAUAUUGCCACCAAUCUCAUAGAAGUUUUGGCCAUGCGCCGCUGUGGCUGCCACAGCAGCAGUCGUCUGCCAAGGGGCAGCCAUCAGGCCGGCGUAGAAC (((((..(.(((((.((((.....)))).)))))((.....)).)..)))))..((((((((((((((((((.(....((((....))))....))))))))).)))..))))))).... ( -49.50) >DroEre_CAF1 7660 117 - 1 GCUAAAGGAUUGGUGGUAAAGAUGUUUCCUCCCAGGUCGUAGAAAUUUUGCCCAUGGGCGGCAGUGGCUG---CUACAGUGCCAGGCGGCCAGGGUCCAGCCACCAAGCCGGGGUAAAAU (((...((.((((((((...((....))..(((.((((((.........(((....)))((((.((....---...)).))))..)))))).)))....)))))))).))..)))..... ( -47.30) >DroYak_CAF1 7512 117 - 1 GCCAAAGGAUUGGUGGUAAAGAUGUUUCCUCCGAGCUCGUAAAAGUUUUGCCCAUGGGCGGCAGUGGCUG---CUACAGUGCCAGGCGGCCAGGGUCCAGCCACCAAGCCGGGGUAAAAU (((...((.((((((((.....((..((((..(.((.(((.........(((....)))((((.((....---...)).))))..))))))))))..)))))))))).))..)))..... ( -44.20) >DroMoj_CAF1 7815 120 - 1 GCCAGGCCAUUGGCAGCAAAUAUAUUGCCACCAAAUUCAUAAAAAUUUUGGCCCUGCGCCGCUGUGGCUGCUGCUACGGUGGUCGGUUGCCACGGAGCAGCCAUCAGCCCUGUAUAGAAU ((..(((((.((((((........))))))..(((((......))))))))))..))(((((((((((....))))))))))).((((((......)))))).................. ( -44.10) >consensus GCCAAAGGAUUGGUGGCAAAGAUGUUGCCACCAAGCUCAUAGAAGUUUUGCCCAUGGGCGGCAGUGGCUG___CUACAGUGCCAGGCGGCCAGGGACCAGCCACCAAGCCGGGGUAGAAU ......((.((((((((.............(.(((((......))))).).((.(((.((.(.(..((((......))))..).).)).))).))....)))))))).)).......... (-18.11 = -19.78 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:01 2006