| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,205,393 – 3,205,484 |
| Length | 91 |
| Max. P | 0.730897 |
| Location | 3,205,393 – 3,205,484 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.59 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -19.86 |
| Energy contribution | -18.95 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3205393 91 - 23771897 AUUGGUUGAUCAUUCGCAACAACAACGCCUUCUUGUUGAAGAAGCGCGAUGUGAAGAAGCCCUUCAGCACAGUAAGU-------A-------AAUAUGGAU--------UUAA--- (((((((((...(((......(((.(((((((((....)))))).))).)))...))).....))))).))))....-------.-------.........--------....--- ( -21.40) >DroVir_CAF1 902 94 - 1 AUUGGUUGAUCAUUCGCAACAACAACGCCUUCUUGUUGAAGAAGCGUGAUGUGAAGAAACCUUUCAGCACGGUAAGUG---UUGA-------CAUUUGG-U--------UUAA--- ....((((........)))).(((.(((((((((....)))))).))).)))....(((((..(((((((.....)))---))))-------.....))-)--------))..--- ( -25.90) >DroGri_CAF1 1313 102 - 1 AUUGGUUGAUCAUUCGCAACAACAACGCCUUCUUGUUGAAGAAGCGCGAUGUUAAGAGACCUUUUAGCACAGUAAGUCGA-UUAAAAAUACCCUUUUGU-U--------UUU---- .....(((((((((..(........(((((((((....)))))).))).((((((((....))))))))..)..))).))-))))..............-.--------...---- ( -21.90) >DroWil_CAF1 3944 106 - 1 ACUGGUUGAUCAUUCGCAACAACAACGCUUUCUUGUUGAAGAAGCGUGAUGUGAAGAAACCCUUCAGCACAGUAAGUUUCGUUUA-------GUUUUGGUUUCUUUCUUCUAA--- (((((((((...(((...(((...((((((.(((....)))))))))..)))...))).....))))).))))............-------.....................--- ( -21.90) >DroMoj_CAF1 912 97 - 1 AUUGGUUGAUCAUUCGCAACAACAACGCCUUCUUGUUGAAGAAGCGCGAUGUGAAGAAACCCUUCAGCACAGUUAGUAUAAUUCG-------AAUUUGA-A--------UUCG--- (((((((((...(((......(((.(((((((((....)))))).))).)))...))).....))))).))))..........((-------(((....-)--------))))--- ( -21.30) >DroAna_CAF1 717 90 - 1 AUUGGUUGAUCAUUCGCAACAACAACGCCUUCUUGUUGAAGAAGCGCGAUGUGAAGAAACCCUUCAGCACAGUAAGU------------------CUGGAC--------UCUCCAA .((((..((((....((....(((.(((((((((....)))))).))).)))((((.....)))).)).(((.....------------------))))).--------)).)))) ( -24.20) >consensus AUUGGUUGAUCAUUCGCAACAACAACGCCUUCUUGUUGAAGAAGCGCGAUGUGAAGAAACCCUUCAGCACAGUAAGU____UU_A_______AAUUUGG_U________UUAA___ (((((((((...(((......(((.(((((((((....)))))).))).)))...))).....))))).))))........................................... (-19.86 = -18.95 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:57 2006