Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,203,086 – 3,203,206 |
Length | 120 |
Max. P | 0.677230 |
Location | 3,203,086 – 3,203,206 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.50 |
Mean single sequence MFE | -48.26 |
Consensus MFE | -39.52 |
Energy contribution | -39.08 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.55 |
Structure conservation index | 0.82 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3203086 120 - 23771897 CCACGCAUGAAACAGAGUGCCCAGGAUGGGGUACUUGGACAGUACCAGCAGACCGGCGCCCAUCACGCCGCUGUGAAAGUAGUGGCUAUGGGGCAGGACCGCCUCCGUGCCCUUUUGGAG ....((((........))))(((((((((((((((.....)))))).((......))..)))))..((((((((....))))))))...(((((((((.....))).)))))).)))).. ( -46.00) >DroSec_CAF1 21965 120 - 1 CCACGCGUGAAACAGAGUGCCCAGGAUGGGGUACUUGGACAGCACCAGCAGACCGGCGCCCAUCACGCCGCUGUGAAAGUAGUGGCUAUGGGGCAGGACCGCCUCCGUGCCCUUCUGGAG ....(.(((.....((((((((......))))))))......))))..((((..(((((((((...((((((((....)))))))).))))((.(((....))))))))))..))))... ( -48.20) >DroEre_CAF1 21234 120 - 1 CCACGCGUGGAACAAAGUGCCCAGUAUGGGGUACUUGGAGAGCACCAGCAGACCAGCGCCCAUCACGCCGCUAUGAAAGUAGUGGCUGUGGGGCAGGACCGCCUCCGUACCCUUCUGCAA ......(..(((..((((((((......))))))))((((.((.((.((......))((((..(((((((((((....)))))))).))))))).))...))))))......)))..).. ( -53.40) >DroYak_CAF1 20364 120 - 1 CCACGCAUGAAACAAAGUGCCCAGUAUGGGGUACUUGGAGAGCACCAGCAGACCGGCGCCCAUUACGCCGCUAUGGAAAUAGUGGCUGUGGGGCAGGACCGCCUCCGUGCCCUUCUGCAG ....(((.......((((((((......))))))))((((.((((..((.(.((.((.(((((...((((((((....)))))))).))))))).)).).))....)))).))))))).. ( -53.20) >DroAna_CAF1 21421 120 - 1 CCACGCAUGAAACAGGGUGCCCAGAAUGGGGUACUUUGAUAGCACAAGCAGCCCAGCUCCCAUUACUCCGCUGUGAAAGUAGUGAGCAUAGGGAAGAACUGCCUGUGUGGCCUUCUGGAG (((((((.....((((((((((......)))))))))).........((((......((((....(((.(((((....))))))))....))))....)))).)))))))((....)).. ( -40.50) >consensus CCACGCAUGAAACAGAGUGCCCAGGAUGGGGUACUUGGACAGCACCAGCAGACCGGCGCCCAUCACGCCGCUGUGAAAGUAGUGGCUAUGGGGCAGGACCGCCUCCGUGCCCUUCUGGAG ....((((........))))((((...(((((((.(((......)))((.(.((.((.(((((...((((((((....)))))))).))))))).)).).))....))))))).)))).. (-39.52 = -39.08 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:54 2006