| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,202,598 – 3,202,699 |
| Length | 101 |
| Max. P | 0.808329 |
| Location | 3,202,598 – 3,202,699 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 84.89 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -15.60 |
| Energy contribution | -17.23 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3202598 101 - 23771897 GAAAUUUAAUAAAGCCUGAACCC-CUGACGAGCUUUGUUGAUGCGACAAGUCAAAGUCGCACAUGAACAGGGAUGCAUUUCUUUGCAUUAUUAAUUUCUAAU ((((((.(((((.........((-(((((((...))))((.((((((........))))))))....))))).((((......))))))))))))))).... ( -25.90) >DroSec_CAF1 21477 101 - 1 GAAAUUUAAUCAAGCCUCAACCC-CUGACGAGCUUUGUUGAUGCGACAAGUCAAAGUCGCACAUGAACAGAGAUGCAUUUCUUUGCAUUAUAAAUUUCUAAC ((((((((.((((((((((....-.))).).))))((((.(((((((........))))))..).))))))((((((......)))))).)))))))).... ( -26.30) >DroSim_CAF1 22151 101 - 1 GAAAUUUAAUCAAGCCUCAACCC-CUGACGAGCUUUGUUGAUGCGACAAGUCAAAGUCGCACAUGAGCAGGGAUGCAUUUCUUUGCAUUAUAUAUUUCUAAC ((((((((((.((((((((....-.))).).)))).)))))((((((........)))))).(((((((((((......))))))).))))..))))).... ( -25.80) >DroYak_CAF1 19872 102 - 1 AAAAUUUAAUAAAGUCUUAACCCUCUGAUGAGCUUUGUGGUUGCGACAAGUCAUAAUCGUCUAUGACCUCGUAGGCAUUUAUUUUCAUUCCACAUUUUCAAU .......(((((((((.((((((((....)))......))))).)))...........(((((((....))))))).))))))................... ( -18.90) >consensus GAAAUUUAAUAAAGCCUCAACCC_CUGACGAGCUUUGUUGAUGCGACAAGUCAAAGUCGCACAUGAACAGGGAUGCAUUUCUUUGCAUUAUAAAUUUCUAAC (((((((((((((((((((......))).).))))))))))((((((........))))))..........((((((......))))))....))))).... (-15.60 = -17.23 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:53 2006