Locus 1094

Sequence ID 3L_DroMel_CAF1
Location 3,201,591 – 3,201,708
Length 117
Max. P 0.708228
window1693

overview

Window 3

Location 3,201,591 – 3,201,708
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.10
Mean single sequence MFE -41.17
Consensus MFE -24.40
Energy contribution -24.57
Covariance contribution 0.17
Combinations/Pair 1.33
Mean z-score -1.77
Structure conservation index 0.59
SVM decision value 0.37
SVM RNA-class probability 0.708228
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3201591 117 - 23771897
AUCCAUGCCACGGCGAAGGAGCUUCAUUUGGACGGGAGUAUAGUGCAAAAUGCUCGUGUUCUGUUGGUCAAUGCAGCCCUUAGCGAAGCACAGGCCAAGAUGCUGAGGCACUGCAGC---
.....((((.((((((((...))))....(((((.((((((........)))))).)))))(.((((((..(((.((.....))...)))..)))))).).)))).)))).......--- ( -38.40)
>DroVir_CAF1 22125 117 - 1
AUACAUGCCACCGCCAAGGAGCUGCAUCUGGAUGGCAGUAUCGUGCAAAAUGCACGAGUCCUCCUAGUCAAUGCAGCGCUUGUUGAGGCGCAGGCGAAAAUGUUGCGGCAUUGCAAU---
....(((((..((((.(((.(((((((.(((..((.((..((((((.....))))))...))))...)))))))))).))).....))))...((((.....)))))))))......--- ( -43.20)
>DroGri_CAF1 23841 117 - 1
AUCCAUGCCACCGCCAAGGAGCUGCAUCUGGACGGCAGCAUUGUCCAGAAUGCACGCGUCCUGCUCGUCAAUGCGGCAUUGUUGGAGGCCCAGGCCAAAAUGUUGCGGCAUUGCAAU---
....(((((..((...(((((((((((((((((((.....)))))))).))))).)).))))...)).....((((((((......(((....)))..)))))))))))))......--- ( -46.20)
>DroWil_CAF1 20665 120 - 1
AUACAUGCCACAGCCAAAGAGUUGCAUCUGGAUGGCAGCAUUGUGCAAAAUGCCAGAGUUCUCUUGGUAAAUGCUUCAUUGAGCGAGGCUCAAGCUAAAAUGUUAAGGCAUUGUAGUCAA
.((((((((...((((.(((......)))...))))((((((..((....(((((((....)).))))).........((((((...))))))))...))))))..)))).))))..... ( -36.30)
>DroMoj_CAF1 20251 117 - 1
AUACAUGCCACAGCCAAGGAGCUGCAUCUGGAUGGAAGCAUUGUGCAAAAUGCGAGAGUUCUGCUCGUCAAUGCAGCGCUGUCUGAGGCCCAGGCUAAGAUGUUGAGGCAUUGCAAU---
....(((((.((((...((.(((((((...(((....(((((......)))))..(((.....)))))).))))))).))((((..(((....))).)))))))).)))))......--- ( -40.10)
>DroAna_CAF1 19959 117 - 1
AUCCAUGCUACGGCGAAGGAGCUUCAUCUGGACGGGAGUAUUGUGCAAAAUGCUCGGGUUCUGUUGGUGAAUGCGGCCCUAAGCGAGGCCCAGGCCAAAAUGCUGAGGCAUUGUAGC---
......((((((((......((((((((.((((..(((((((......)))))))..))))....)))))).))((((........))))...)))..(((((....))))))))))--- ( -42.80)
>consensus
AUACAUGCCACAGCCAAGGAGCUGCAUCUGGACGGCAGCAUUGUGCAAAAUGCACGAGUUCUGCUGGUCAAUGCAGCACUGAGCGAGGCCCAGGCCAAAAUGUUGAGGCAUUGCAAU___
....(((((.((((...((.(((((((..((((....(((((......)))))....)))).........))))))).))......(((....))).....)))).)))))......... (-24.40 = -24.57 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:52 2006