Locus 1091

Sequence ID 3L_DroMel_CAF1
Location 3,191,377 – 3,191,475
Length 98
Max. P 0.843883
window1688

overview

Window 8

Location 3,191,377 – 3,191,475
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.52
Mean single sequence MFE -30.32
Consensus MFE -21.67
Energy contribution -22.95
Covariance contribution 1.28
Combinations/Pair 1.30
Mean z-score -2.52
Structure conservation index 0.71
SVM decision value 0.76
SVM RNA-class probability 0.843883
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3191377 98 + 23771897
CUCAGUCUCCUGUUUCUCCUUUGCUGAUUGGCUGUCACCGCUUCACCCAACUGGGUAAGCUCGGCCAAGAGCAGCAUUCCCAAAAUAAGAUACUCGCA
...(((.((.(((((......(((((.(((((((.....((((.((((....)))))))).)))))))...)))))......))))).)).))).... ( -31.90)
>DroPse_CAF1 11874 92 + 1
CUCAAUCUCCUU------CUUGCCCGGUUGGCCUGCGCCGCCUCGGUCAUCUGGGCCAGCACGGCCAGCAGCAGCACAGCUAAGAUCAGGUACUCCCA
....((((...(------(((.....((((((((((...(((.(((....))))))..))).)))))))(((......)))))))..))))....... ( -30.90)
>DroSec_CAF1 9635 98 + 1
CUCAGUCUCCUGUUUCUCCUUUGCUGAUUGGCUGUCACCGCUUCACCCAACUGGGUGAGCUCGGCCAAGACCAGCAUGCCCAAAAUAAGAAACUCCCA
...(((.((.(((((......(((((.(((((((.....(((.(((((....)))))))).)))))))...)))))......))))).)).))).... ( -33.10)
>DroSim_CAF1 9598 98 + 1
CUCAGUCUCCUGUUUCUCCUUUGCUGAUUGGCUGUCACCGCUUCACCCAACUGGGUGAGCUCGGCCAAGACCAGCAUGCCCAAAAUAAGAUACUCCCA
...(((.((.(((((......(((((.(((((((.....(((.(((((....)))))))).)))))))...)))))......))))).)).))).... ( -33.10)
>DroEre_CAF1 9619 98 + 1
CUCAGUCUCCUGUUUCUCCUUUGCUGAUUGCUUGCCACGGUUUCGCCCAACUGGAUGAGCUCGGCCAAGAGCAGCAUGCCCAAAAUAAGACACUCCCA
....((((..(((((......(((((....((((.(.((..((((.((....)).))))..))).))))..)))))......)))))))))....... ( -23.80)
>DroYak_CAF1 9606 98 + 1
CUCAGUCUCCUGUUUCUCCUUUGCUUGUUGGUUGCCACGGCUUCACCCAGUUGGGUGAGCUCGGCCAAGAGCAGCAUGCCCAGAAUAAGAUACUCCCA
...(((.((.(((((......(((((.(((((((....((((.(((((....)))))))))))))))).)..))))......))))).)).))).... ( -29.10)
>consensus
CUCAGUCUCCUGUUUCUCCUUUGCUGAUUGGCUGUCACCGCUUCACCCAACUGGGUGAGCUCGGCCAAGAGCAGCAUGCCCAAAAUAAGAUACUCCCA
...(((.((.(((((......(((((.(((((((.....((.((((((....)))))))).)))))))...)))))......))))).)).))).... (-21.67 = -22.95 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:47 2006