Locus 109

Sequence ID 3L_DroMel_CAF1
Location 373,116 – 373,230
Length 114
Max. P 0.509630
window156

overview

Window 6

Location 373,116 – 373,230
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.50
Mean single sequence MFE -30.16
Consensus MFE -21.01
Energy contribution -21.86
Covariance contribution 0.85
Combinations/Pair 1.08
Mean z-score -1.40
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.509630
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 373116 114 + 23771897
CAAUGAAAAUGCGGUUCGUGCUCCUGGCCCGUAUUGGGGUUUUUCAUCCCCCUUUGCCGCCCGUGAAGGCGCUGGAAAUUCCCCCUGGAAAUUCCCCUUCCAAUAUAC------AAAGCA
.......(((((((..((......))..)))))))((((..((((...(.((((..(.....)..)))).)...))))..)))).(((((.......)))))......------...... ( -32.20)
>DroSec_CAF1 27224 111 + 1
CAAUGAAAAUGCGGUUCGUGCUCCUGGCCCGUAUUGGGGAUUUUCAGCCCCCUUUGCCGCCCGUGAUGGCGCCC---AAUCCCCCUGGAAAUUCCCCUUCCAAUAGCC------AAAGCA
.......(((((((..((......))..)))))))((((((((((((......(((.((((......))))..)---)).....)))))))))))).........((.------...)). ( -32.20)
>DroSim_CAF1 28035 111 + 1
CAAUGAAAAUGCGGUUCGUGCUCCUGGCCCGUAUUGGGGUUUUUCAGCCCCCUUUGCCGCCCGUGAUGGCGCCC---AAUCCCCCUGGAAAUUCCCCUUCCAAUAGCC------AAAGCA
.......(((((((..((......))..)))))))((((.(((((((......(((.((((......))))..)---)).....)))))))..))))........((.------...)). ( -30.00)
>DroEre_CAF1 28602 87 + 1
CAAUGAAAAUGCGGUUCGUGCUCCUGGCCCGCAUUGGGGUUUUUCAGCUCAA---------------------------ACCCCCUGGAAAUUCCCCUUCCAAUAACA------ACAGCA
.......(((((((..((......))..)))))))(((((((........))---------------------------))))).(((((.......)))))......------...... ( -24.40)
>DroYak_CAF1 28975 101 + 1
CAAUGAAAAUGCGGUUCGUGCUCCCGGCCCGCAUUGGGGUUUUUCCGCCCCCUUUGCUGC-------------------CGCCCCUGGAAAUUCCCCUUCCAAUAGCAACUGCAACAGCA
.........((((((...((((..((((..(((..(((((......)))))...))).))-------------------))....(((((.......)))))..))))))))))...... ( -32.00)
>consensus
CAAUGAAAAUGCGGUUCGUGCUCCUGGCCCGUAUUGGGGUUUUUCAGCCCCCUUUGCCGCCCGUGA_GGCGC_____A_UCCCCCUGGAAAUUCCCCUUCCAAUAGCC______AAAGCA
.......(((((((..((......))..)))))))((((.(((((((..........((((......)))).............)))))))..))))....................... (-21.01 = -21.86 +   0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:42 2006