Locus 1089

Sequence ID 3L_DroMel_CAF1
Location 3,186,100 – 3,186,220
Length 120
Max. P 0.507250
window1686

overview

Window 6

Location 3,186,100 – 3,186,220
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.11
Mean single sequence MFE -45.62
Consensus MFE -26.75
Energy contribution -29.03
Covariance contribution 2.28
Combinations/Pair 1.19
Mean z-score -1.54
Structure conservation index 0.59
SVM decision value -0.05
SVM RNA-class probability 0.507250
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3186100 120 - 23771897
GUGUCCACCAUUGAGCUGUGCAAUACCAGCUUCAAGGCAGGCGAUCUGAUCAAGGUCUCUGGCUGGGGACAAAUUACGGAGCGCAACAAGGCAGUUUCAAUGCAGGUGCGCAGCGUAGAU
.(((((.(((((((((((........)))).))))(.((((.(((((.....))))))))).)))))))))..(((((..(((((.(...(((.......)))..))))))..))))).. ( -45.40)
>DroVir_CAF1 4532 120 - 1
AUUGCGACCAUUGAGCUGUGCAACUCCAGCUUUCAGGCUGGCGAUCUGAUCAAGGUCUCCGGCUGGGGCAAGACCACCGAGAACAGCAAACGCGUCUCGCAGCAUGCUCGCAGCGUCGAC
....(((((..(((((.((((.......((((...((((((.(((((.....))))).)))))).))))........(((((...((....)).)))))..)))))))))..).)))).. ( -45.10)
>DroPse_CAF1 5387 120 - 1
AUAGCCACCAUCGAGCUGUGCAACUCCAGCUGGAACGCCGGCGAGCUGAUCAAGGUCUCGGGAUGGGGACUAGUCUCGGAACGCAGCAAGAGUGUCUCCAUGCAGGUGCGCAGCGUGGAC
.......((((...((((((((...((.(((((....)))))(((((......)).))).(.((((((((....(((............))).)))))))).).)))))))))))))).. ( -45.10)
>DroYak_CAF1 4285 120 - 1
GUGAGCACCAUUGAGCUGUGCAAUUCCAGCUUUAAGGCCGGUGAUCUCAUCAAGGUCUCCGGCUGGGGACAAAUCACGGAGCGUAACAAGGCAGCUUCAAUGCAGGUGCGCAGCGUGGAU
.......((((...((((((((...((.((.....((((((.(((((.....))))).))))))(....).......(((((((......)).)))))...)).)))))))))))))).. ( -45.20)
>DroAna_CAF1 4577 120 - 1
AUAGCCACCAUUGAGCUGUGCAACACCACCUUCAAAGCCGGCGACCUCAUAAAGGUUUCCGGCUGGGGACAGAUCACAGAACGGAAUAAGGCUGUCUCCCUGCAGGUGCGCAGCGUGGAG
.......((((...(((((((......((((.((.((((((.(((((.....))))).))))))((((((((.((..............)))))))))).)).))))))))))))))).. ( -47.84)
>DroPer_CAF1 4251 120 - 1
AUAGCCACCAUCGAGCUGUGCAACUCCAGCUGGAACGCCGGCGAGCUGAUCAAGGUCUCGGGAUGGGGACUAGUCUCGGAACGCAGCAAGAGUGUCUCCAUGCAGGUGCGCAGCGUGGAC
.......((((...((((((((...((.(((((....)))))(((((......)).))).(.((((((((....(((............))).)))))))).).)))))))))))))).. ( -45.10)
>consensus
AUAGCCACCAUUGAGCUGUGCAACUCCAGCUUCAAGGCCGGCGAUCUGAUCAAGGUCUCCGGCUGGGGACAAAUCACGGAACGCAACAAGGCUGUCUCCAUGCAGGUGCGCAGCGUGGAC
.......((((...((((((((...((.((.....((((((.(((((.....))))).)))))).(((((.......................)))))...)).)))))))))))))).. (-26.75 = -29.03 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:45 2006