Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,182,709 – 3,182,802 |
Length | 93 |
Max. P | 0.505084 |
Location | 3,182,709 – 3,182,802 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -15.95 |
Consensus MFE | -10.73 |
Energy contribution | -9.97 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.40 |
Mean z-score | -1.55 |
Structure conservation index | 0.67 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3182709 93 + 23771897 AAACAAAA-CCUUUUGAAUAUAAGUAUCUUAUACAUUACAUACAGGUGUUUUUACUUUUAGCUAGUUAUCUAGCUAUUUGAAACCGUUAUUGUC ..((((.(-(((..((((((((((...))))))..)).))...))))(((((......(((((((....)))))))...))))).....)))). ( -15.40) >DroSec_CAF1 871 92 + 1 GAACAAAA-CCU-UUGACUAUAAGUAUCUCAUACAUUACAUUUAGGUGUUUUCACUUUUAGCUAGUUAUCUAGCUAUUUGUAACCGUUAUAGUG ........-...-...(((((((((((...)))).(((((...(((((....))))).(((((((....)))))))..)))))...))))))). ( -19.40) >DroSim_CAF1 873 92 + 1 GAACAAAA-CCU-UUGAAUAUAAGUAUCUCAUACAUUACAUUUAGGUGUUUUCACUUUUAGCUAGUUAUCUAGCUAUUUUUAACCGUUAUUGUG .(((((((-(.(-((((((.(((((((...)))).))).))))))).)))))......(((((((....))))))).........)))...... ( -15.90) >DroEre_CAF1 921 93 + 1 AGAUUAAAACCU-UCCAACAUAAUUAUGUUAUAACUUACAUUUGUGUACCUUAACAUUCAGCUAGUCAUCUGGCUAUUAGUAACCGUUAUUGUA ............-...(((((....)))))(((((((((....((((......))))..((((((....))))))....))))..))))).... ( -13.10) >consensus AAACAAAA_CCU_UUGAAUAUAAGUAUCUCAUACAUUACAUUUAGGUGUUUUCACUUUUAGCUAGUUAUCUAGCUAUUUGUAACCGUUAUUGUG .(((.......................................(((((....))))).(((((((....))))))).........)))...... (-10.73 = -9.97 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:44 2006