Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,178,057 – 3,178,177 |
Length | 120 |
Max. P | 0.842695 |
Location | 3,178,057 – 3,178,177 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.78 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -31.59 |
Energy contribution | -31.15 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.24 |
Mean z-score | -1.62 |
Structure conservation index | 0.89 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3178057 120 - 23771897 AUAGCGGAUCUUGUCCAGGGCAUCGGAAGCGUUCGAGAUCAACUCGCGCAGGAAAAUCUCCUUGUUCGAGUAGAAUGUGUUGAUGAUCAGGGACAUCAGCUGAGCAAUCUCAGCCUGGAA ....(((....(((((..(((((((...(((((((....).(((((.((((((.....))).))).))))).))))))..))))).))..)))))...((((((....)))))))))... ( -41.80) >DroVir_CAF1 15528 120 - 1 AUAGCGGAUCUUGUCGAGCGCAUCAGACGCAUUGGAAAUCAAUUCACGCAAGAAGAUUUCUUUGUUCGAGUAGAAUGUGUUGAUGAUCAACGACAUGAGCUGAGCAAUCUCAGCCUGGAA ....(((.((.(((((....((((((.(((...(((((((..(((......))))))))))..((((.....))))))))))))).....))))).))((((((....)))))))))... ( -34.40) >DroPse_CAF1 18446 120 - 1 AUAGCGGAUCUUGUCGAGGGCAUCAGAUGCGUUCGAAAUCAAUUCACGCAAGAAGAUCUCCUUGUUCGAGUAGAACGUGUUGAUGAUCAACGACAUAAGCUGAGCAAUCUCAGCCUGGAA ....(((....(((((..(((((((.(((((((((....).((((..(((((........)))))..)))).))))))))))))).))..)))))...((((((....)))))))))... ( -37.50) >DroGri_CAF1 17663 120 - 1 AUAGCGGAUCUUGUCGAGGGCAUCGGACGCAUUCGAAAUCAAUUCACGCAAAAAGAUCUCCUUGUUCGAAUAGAAUGUGUUGAUGAUCAACGACAUCAGCUGAGCAAUCUCAGCCUGGAA ....(((....(((((..(((((((.(((((((((((.....))).((.((.(((.....))).))))....))))))))))))).))..)))))...((((((....)))))))))... ( -34.50) >DroMoj_CAF1 14766 120 - 1 AUAGCGGAUCUUGUCGAGUGCAUCAGACGCAUUGGAAAUCAAUUCACGCAAGAAGAUUUCUUUGUUUGAGUAGAAUGUGUUAAUGAUCAACGACAUAAGCUGAGCAAUCUCAGCCUGGAA ....(((....(((((..((.(((((((((((......((.(((((.(((((........))))).))))).)))))))))..)))))).)))))...((((((....)))))))))... ( -31.60) >DroAna_CAF1 15811 120 - 1 GUAGCGGAUCUUGUCGAGAGCAUCAGAUGCGUUCGAGAUCAACUCACGCAGGAAAAUCUCCUUGUUCGAAUAGAAUGUGUUGAUGAUCAGGGACAUCAGCUGAGCAAUCUCAGCCUGGAA ((....((((...(((((.((((...)))).))))).((((((.(....((((.....)))).((((.....))))).))))))))))....)).(((((((((....))))).)))).. ( -33.70) >consensus AUAGCGGAUCUUGUCGAGGGCAUCAGACGCAUUCGAAAUCAAUUCACGCAAGAAGAUCUCCUUGUUCGAGUAGAAUGUGUUGAUGAUCAACGACAUCAGCUGAGCAAUCUCAGCCUGGAA ....(((....(((((....(((((.(((((((((....).((((..(((((........)))))..)))).))))))))))))).....)))))...((((((....)))))))))... (-31.59 = -31.15 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:43 2006