Locus 1087

Sequence ID 3L_DroMel_CAF1
Location 3,178,057 – 3,178,177
Length 120
Max. P 0.842695
window1684

overview

Window 4

Location 3,178,057 – 3,178,177
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.78
Mean single sequence MFE -35.58
Consensus MFE -31.59
Energy contribution -31.15
Covariance contribution -0.44
Combinations/Pair 1.24
Mean z-score -1.62
Structure conservation index 0.89
SVM decision value 0.76
SVM RNA-class probability 0.842695
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3178057 120 - 23771897
AUAGCGGAUCUUGUCCAGGGCAUCGGAAGCGUUCGAGAUCAACUCGCGCAGGAAAAUCUCCUUGUUCGAGUAGAAUGUGUUGAUGAUCAGGGACAUCAGCUGAGCAAUCUCAGCCUGGAA
....(((....(((((..(((((((...(((((((....).(((((.((((((.....))).))).))))).))))))..))))).))..)))))...((((((....)))))))))... ( -41.80)
>DroVir_CAF1 15528 120 - 1
AUAGCGGAUCUUGUCGAGCGCAUCAGACGCAUUGGAAAUCAAUUCACGCAAGAAGAUUUCUUUGUUCGAGUAGAAUGUGUUGAUGAUCAACGACAUGAGCUGAGCAAUCUCAGCCUGGAA
....(((.((.(((((....((((((.(((...(((((((..(((......))))))))))..((((.....))))))))))))).....))))).))((((((....)))))))))... ( -34.40)
>DroPse_CAF1 18446 120 - 1
AUAGCGGAUCUUGUCGAGGGCAUCAGAUGCGUUCGAAAUCAAUUCACGCAAGAAGAUCUCCUUGUUCGAGUAGAACGUGUUGAUGAUCAACGACAUAAGCUGAGCAAUCUCAGCCUGGAA
....(((....(((((..(((((((.(((((((((....).((((..(((((........)))))..)))).))))))))))))).))..)))))...((((((....)))))))))... ( -37.50)
>DroGri_CAF1 17663 120 - 1
AUAGCGGAUCUUGUCGAGGGCAUCGGACGCAUUCGAAAUCAAUUCACGCAAAAAGAUCUCCUUGUUCGAAUAGAAUGUGUUGAUGAUCAACGACAUCAGCUGAGCAAUCUCAGCCUGGAA
....(((....(((((..(((((((.(((((((((((.....))).((.((.(((.....))).))))....))))))))))))).))..)))))...((((((....)))))))))... ( -34.50)
>DroMoj_CAF1 14766 120 - 1
AUAGCGGAUCUUGUCGAGUGCAUCAGACGCAUUGGAAAUCAAUUCACGCAAGAAGAUUUCUUUGUUUGAGUAGAAUGUGUUAAUGAUCAACGACAUAAGCUGAGCAAUCUCAGCCUGGAA
....(((....(((((..((.(((((((((((......((.(((((.(((((........))))).))))).)))))))))..)))))).)))))...((((((....)))))))))... ( -31.60)
>DroAna_CAF1 15811 120 - 1
GUAGCGGAUCUUGUCGAGAGCAUCAGAUGCGUUCGAGAUCAACUCACGCAGGAAAAUCUCCUUGUUCGAAUAGAAUGUGUUGAUGAUCAGGGACAUCAGCUGAGCAAUCUCAGCCUGGAA
((....((((...(((((.((((...)))).))))).((((((.(....((((.....)))).((((.....))))).))))))))))....)).(((((((((....))))).)))).. ( -33.70)
>consensus
AUAGCGGAUCUUGUCGAGGGCAUCAGACGCAUUCGAAAUCAAUUCACGCAAGAAGAUCUCCUUGUUCGAGUAGAAUGUGUUGAUGAUCAACGACAUCAGCUGAGCAAUCUCAGCCUGGAA
....(((....(((((....(((((.(((((((((....).((((..(((((........)))))..)))).))))))))))))).....)))))...((((((....)))))))))... (-31.59 = -31.15 +  -0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:43 2006