Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,173,712 – 3,173,832 |
Length | 120 |
Max. P | 0.537549 |
Location | 3,173,712 – 3,173,832 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.67 |
Mean single sequence MFE | -42.30 |
Consensus MFE | -30.27 |
Energy contribution | -30.67 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.28 |
Mean z-score | -1.09 |
Structure conservation index | 0.72 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3173712 120 - 23771897 AGAUCACUGGCUGGUCCGUGCACACCAGGCCAUCCGUGCAGACGAAGGUUUGGUUGGUAUUCGGCUGAGUGGAGCCGAAGCACAAAUUGUAUGCGGUCUGGUUGAUGCAGGAGGCUCCAU .......(((..(((((.(((((((((((((..(((..(((((....)))))..)))..(((((((......)))))))(((.........)))))))))).)).)))).).))))))). ( -47.10) >DroPse_CAF1 12806 120 - 1 AAAUAAUUGGCUGAUCUGUGCAGACCAGGCCAUCCGUGCACGUGAAGUUCUGUGCGGUAUUGGGCAUGCUGCUGCCAAAGCAUAGGUUGUACGAGGUCUGAUUAAUGCAAGCGGCCCCAU ........(((((.....((((...((((((...(((((((.....))(((((((.......((((......))))...)))))))..))))).)))))).....))))..))))).... ( -39.40) >DroEre_CAF1 10721 120 - 1 AGAUCACAGGCUCGUCCGUGCACACCAGGCCAUCCGUGCAGACAAAGGUCUGGUUGGUAUUCGGCUGAGAGCCGCCGAAGCACAAAUUGUAUGCGGUCUGGUUGAUGCAGGAGGCUCCAU ........((..(.(((.(((((((((((((..(((..(((((....)))))..)))..((((((........))))))(((.........)))))))))).)).))))))).)..)).. ( -45.60) >DroYak_CAF1 11094 120 - 1 AGAUCACGGGCUGGUCCGUGCACACCAGGCCAUCUGUGCAGACAAAGGUCUGGUUGGUAUUCGGCUCAGUGCCGCCGAAGCACAAGUUGUAUGCGGUCUGGUUGAUGCAGGAGGCUCCAU .......(((((..(((.(((((((((((((...(((((((((....))))........((((((........))))))))))).((.....))))))))).)).)))))))))).)).. ( -48.10) >DroAna_CAF1 10256 120 - 1 AUAUCACGGGCUGAUCCGUACACACCAAUCCAUCCGUGCAGAUGAAGGUCUGAUUGGUGUCGGGUUGGGUUCUUCCGAAACACAAAUGAUAAGCGGUCUGGUUGAUGCAAGCAGCUCCAU .((((((((((..(((((...(((((((((...((...(....)..))...))))))))))))))..).....)))).........)))))...((.(((.(((...))).)))..)).. ( -34.20) >DroPer_CAF1 10129 120 - 1 AAAUAAUUGGCUGAUCUGUGCAGACCAGGCCAUCCGUGCACGUGAAGUUCUGUGCGGUAUUGGGCAUGCUGCUGCCAAAGCAUAGGUUGUACGAGGUCUGAUUAAUGCAAGCGGCCCCAU ........(((((.....((((...((((((...(((((((.....))(((((((.......((((......))))...)))))))..))))).)))))).....))))..))))).... ( -39.40) >consensus AGAUCACUGGCUGAUCCGUGCACACCAGGCCAUCCGUGCAGACGAAGGUCUGGUUGGUAUUCGGCUGAGUGCUGCCGAAGCACAAAUUGUAUGCGGUCUGGUUGAUGCAAGAGGCUCCAU ........((((...((.((((.((((((((..(((..(((((....)))))..))).....(((........)))..................))))))))...)))))).)))).... (-30.27 = -30.67 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006