Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,172,131 – 3,172,254 |
Length | 123 |
Max. P | 0.906771 |
Location | 3,172,131 – 3,172,223 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 89.31 |
Mean single sequence MFE | -19.95 |
Consensus MFE | -13.61 |
Energy contribution | -13.80 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -2.42 |
Structure conservation index | 0.68 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3172131 92 - 23771897 UACCGAAUCGAGUACGGAUUCUACUACCUCUGCAAUUAGUACCGAAUCUAGUACGGACUCAACUACAUCUGAAGUUACUACCAAUUCGAGUA ((((((((...(((((((((((((((..........)))))..)))))).))))((....((((.(....).))))....)).))))).))) ( -18.60) >DroSec_CAF1 9305 92 - 1 UACCGAAUCGAGUACGGAUUCUACUACUUCUGAAAUUAGUACCGAAUCGAGUACGGACUCAACUACUUCUGAACUUACUACUGAUUCGAGUA (((((((((.((((.(((((((((((.((....)).)))))..)))))((((.((((..........)))).)))).))))))))))).))) ( -21.60) >DroSim_CAF1 9316 92 - 1 UACCGAAUCGAGUACGGAUUCUACUACUUCUGAAAUUAGUACCGAAUCGAGUACGGACUCAACUACUUCUGAACUUACUACUGAUUCGAGUA (((((((((.((((.(((((((((((.((....)).)))))..)))))((((.((((..........)))).)))).))))))))))).))) ( -21.60) >DroEre_CAF1 8999 92 - 1 UACCGAAUCCACUACAGAUUCUACUACUUCAGAAAUUAGUACCGAAUCUAGUACAGAUUCAACUCCAUCUGAAAUUAGUACCGAAUCCACUA ................((((((((((.((((((....(((...((((((.....)))))).)))...))))))..)))))..)))))..... ( -18.00) >consensus UACCGAAUCGAGUACGGAUUCUACUACUUCUGAAAUUAGUACCGAAUCGAGUACGGACUCAACUACAUCUGAACUUACUACCGAUUCGAGUA ...((((((.((((..((((((((((..........)))))..))))).....((((..........))))....))))...)))))).... (-13.61 = -13.80 + 0.19)
Location | 3,172,161 – 3,172,254 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 91.76 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -21.14 |
Energy contribution | -21.82 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.06 |
Mean z-score | -2.13 |
Structure conservation index | 0.83 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3172161 93 + 23771897 UUGAGUCCGUACUAGAUUCGGUACUAAUUGCAGAGGUAGUAGAAUCCGUACUCGAUUCGGUACUAAUUUCAGAAGUAGUAGAAUCUGUACUCG ........((((.((((((..(((((....(.((((((((((((((.......)))))..)))).))))).)...)))))))))))))))... ( -22.20) >DroSec_CAF1 9335 93 + 1 UUGAGUCCGUACUCGAUUCGGUACUAAUUUCAGAAGUAGUAGAAUCCGUACUCGAUUCGGUACUAAUAUCAGAAGUAGUAGAAUCUGUACUCG ........((((..(((((..(((((.((((.((..((((((((((.......)))))..)))))...)).)))))))))))))).))))... ( -21.50) >DroSim_CAF1 9346 93 + 1 UUGAGUCCGUACUCGAUUCGGUACUAAUUUCAGAAGUAGUAGAAUCCGUACUCGAUUCGGUACUUAUUUCAGAAGUAGUUGAGUCCGUACUCG ..((((.((.((((((((........(((((.((((((((((((((.......)))))..))).)))))).))))))))))))).)).)))). ( -25.40) >DroEre_CAF1 9029 93 + 1 UUGAAUCUGUACUAGAUUCGGUACUAAUUUCUGAAGUAGUAGAAUCUGUAGUGGAUUCGGUACUAAUUUCAGAAGUAGUAGAAUCUGUACUAG ........((((.((((((..(((((.((((((((((((((((((((.....))))))..)))).)))))))))))))))))))))))))... ( -32.50) >consensus UUGAGUCCGUACUAGAUUCGGUACUAAUUUCAGAAGUAGUAGAAUCCGUACUCGAUUCGGUACUAAUUUCAGAAGUAGUAGAAUCUGUACUCG ........((((.((((((...((((.((((.((((((((((((((.......)))))..)))).))))).)))))))).))))))))))... (-21.14 = -21.82 + 0.69)
Location | 3,172,161 – 3,172,254 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.76 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -16.80 |
Energy contribution | -18.30 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -3.42 |
Structure conservation index | 0.69 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3172161 93 - 23771897 CGAGUACAGAUUCUACUACUUCUGAAAUUAGUACCGAAUCGAGUACGGAUUCUACUACCUCUGCAAUUAGUACCGAAUCUAGUACGGACUCAA .((((.(.((((((((((.((....)).)))))..)))))..(((((((((((((((..........)))))..)))))).))))).)))).. ( -22.50) >DroSec_CAF1 9335 93 - 1 CGAGUACAGAUUCUACUACUUCUGAUAUUAGUACCGAAUCGAGUACGGAUUCUACUACUUCUGAAAUUAGUACCGAAUCGAGUACGGACUCAA .((((.((((..........))))......(((((((.(((.((((...(((..........)))....))))))).))).))))..)))).. ( -24.20) >DroSim_CAF1 9346 93 - 1 CGAGUACGGACUCAACUACUUCUGAAAUAAGUACCGAAUCGAGUACGGAUUCUACUACUUCUGAAAUUAGUACCGAAUCGAGUACGGACUCAA .((((.((.((((...(((((.......)))))..((.(((.((((...(((..........)))....))))))).)))))).)).)))).. ( -22.90) >DroEre_CAF1 9029 93 - 1 CUAGUACAGAUUCUACUACUUCUGAAAUUAGUACCGAAUCCACUACAGAUUCUACUACUUCAGAAAUUAGUACCGAAUCUAGUACAGAUUCAA ...(((((((((((((((.(((((((..(((((..(((((.......)))))))))).)))))))..)))))..)))))).))))........ ( -27.30) >consensus CGAGUACAGAUUCUACUACUUCUGAAAUUAGUACCGAAUCGAGUACGGAUUCUACUACUUCUGAAAUUAGUACCGAAUCGAGUACGGACUCAA ...(((((((((((((((.(((.((...(((((..(((((.......))))))))))..)).)))..)))))..)))))).))))........ (-16.80 = -18.30 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:36 2006