Locus 1079

Sequence ID 3L_DroMel_CAF1
Location 3,154,880 – 3,154,995
Length 115
Max. P 0.699892
window1670

overview

Window 0

Location 3,154,880 – 3,154,995
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.84
Mean single sequence MFE -27.04
Consensus MFE -20.36
Energy contribution -21.36
Covariance contribution 1.00
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.75
SVM decision value 0.35
SVM RNA-class probability 0.699892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3154880 115 - 23771897
UUGGAUAAUC-AUUGCCAC----UGCUGGCAACAUUGCACCAAAGUUAUUAACAAUCAAUGGGGACUAACUACAUCUAUGCGUAAUACGUAUAUGCAUCUAUACGUGAAACAUGGUCUCC
((((......-.((((((.----...)))))).......)))).................((((((((..(((........))).((((((((......)))))))).....)))))))) ( -26.84)
>DroSec_CAF1 1780 115 - 1
UUGGAUAAUC-ACUGCCAC----UGCUGGCAACAUUGCACCAAAGUUAUUAACAAUCAAUGGGGACUAACUACAUCUAUGCGUAAUACGUAUAUGCAUCUAUACGUGAAACGUGGUCUCC
((((.((((.-..(((((.----...)))))..))))..)))).................(((((((............((((..((((((((......))))))))..))))))))))) ( -26.70)
>DroSim_CAF1 2149 115 - 1
UUGGAUAUUC-AUUGCCAC----UGCUGGCAACAUUGCACCAAAGUUAUUAACAAUCAAUGGGGACUAACUACAUCUAUGCGUAAUACGUAUAUGCAUCUAUACGUGAAACGUGGUCUCC
((((......-.((((((.----...)))))).......)))).................(((((((............((((..((((((((......))))))))..))))))))))) ( -27.64)
>DroEre_CAF1 2828 114 - 1
UUGGAUAAUC-UUUGCUAA----UGCUGGGAACAUUGGACCAAGGUCUUUAACAAUUAAUGGGGACUAACUACAUCUAU-CGUAAUACGUAUAUGUAUCUAAAGGAAAAACGUGGUCUCC
..(((...((-(..((...----.))..)))......(((((.((((((((........))))))))...(((((.((.-((.....)))).)))))...............)))))))) ( -22.70)
>DroYak_CAF1 2344 120 - 1
UUGUAUAAUAACUUGCCAACAUGUAGUGGCAACAUAGGACCAAAGUCUUCAACAAUUAAUGGGGACUACCUACAUCUAGAUGUAAUACGUAUUUGUAUCUAUACGUAAAACAUGGUCUCC
............((((((........))))))....((((((.((((((((........))))))))...(((((....))))).(((((((........))))))).....)))))).. ( -31.30)
>consensus
UUGGAUAAUC_AUUGCCAC____UGCUGGCAACAUUGCACCAAAGUUAUUAACAAUCAAUGGGGACUAACUACAUCUAUGCGUAAUACGUAUAUGCAUCUAUACGUGAAACGUGGUCUCC
((((........((((((........)))))).......)))).................((((((((..(((........))).((((((((......)))))))).....)))))))) (-20.36 = -21.36 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:30 2006