Locus 1076

Sequence ID	3L_DroMel_CAF1
Location	3,150,289 – 3,150,380
Length	91
Max. P	0.614918

overview

Window 1

Location	3,150,289 – 3,150,380
Length	91
Sequences	4
Columns	94
Reading direction	reverse
Mean pairwise identity	80.47
Mean single sequence MFE	-24.80
Consensus MFE	-15.64
Energy contribution	-17.07
Covariance contribution	1.44
Combinations/Pair	1.14
Mean z-score	-1.78
Structure conservation index	0.63
SVM decision value	0.17
SVM RNA-class probability	0.614918
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3150289 91 - 23771897
AACGAGUACGAUGACGUAUGUGGGCGAUAUGCAUUGAUCU---CAGCUGAAUCAGCUUCGAUUUGGUUUACACUCGAUCGAAGCAAAUUCGUUA
((((((..(((((.((((((....).))))))))))..))---)....((((..(((((((((.(((....))).)))))))))..))))))). ( -28.90)
>DroSec_CAF1 14075 87 - 1
----AGUACGAUGACGUAUGUGGGCGAUAUGCAUUGAUCU---CAGCUGAAUCAGCUUCGAUUUGGUUUACACUCGAUCGAAGCAAAUUCGUUA
----....(((((.((((((....).))))))))))....---.(((.((((..(((((((((.(((....))).)))))))))..))))))). ( -25.30)
>DroEre_CAF1 14204 88 - 1
---GAGUACGAUGACGUAUGUGGGCGAUAUGCAUUGAUCU---CAGCUGAAUCGGCUUCGAUUUGGUUUACACUCGAUCGAAGCAAAUUCGUUA
---(((..(((((.((((((....).))))))))))..))---)(((.((((..(((((((((.(((....))).)))))))))..))))))). ( -29.40)
>DroAna_CAF1 13455 84 - 1
--UGGAUACGAUGAGGCAU------GAUAUGCACU--UCCAAGCUGCUGAAUCAACUUCGAAUUGGUUUAUACUUGAUUUCGGCCAACCCGAUA
--(((...(((.(((((((------...)))).))--).((((.((.((((((((.......))))))))))))))...))).)))........ ( -15.60)
>consensus
___GAGUACGAUGACGUAUGUGGGCGAUAUGCAUUGAUCU___CAGCUGAAUCAGCUUCGAUUUGGUUUACACUCGAUCGAAGCAAAUUCGUUA
...............((((((.....))))))................((((..(((((((((.(((....))).)))))))))..)))).... (-15.64 = -17.07 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:22 2006