Locus 1075

Sequence ID 3L_DroMel_CAF1
Location 3,148,586 – 3,148,681
Length 95
Max. P 0.556413
window1660

overview

Window 0

Location 3,148,586 – 3,148,681
Length 95
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 78.43
Mean single sequence MFE -21.00
Consensus MFE -11.56
Energy contribution -10.96
Covariance contribution -0.60
Combinations/Pair 1.21
Mean z-score -1.78
Structure conservation index 0.55
SVM decision value 0.05
SVM RNA-class probability 0.556413
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3148586 95 - 23771897
CAAGGCAAUCGAUAACUUUCGAUUUUUCUUGUAUCGAUUGCAUUCCGU-------UCCCAUACAAUAGAAGUGCCAUCGAAAUGCACAGCGAAAAACACACG
(((((.((((((......))))))..)))))..(((..((((((.((.-------...(((.........)))....)).))))))...))).......... ( -18.80)
>DroSec_CAF1 12437 83 - 1
CGAGGCAAUCGAUAACUUUCGAUUCAUCUUGUAUCGAUUGCAUGCCUU-------UUCCAAACAACAG------------AAUGCACUGCGAAAAACACACG
(((((.((((((......))))))..)))))......((((((((.((-------((.........))------------)).))).))))).......... ( -15.10)
>DroSim_CAF1 12642 95 - 1
CGAGGCAAUCGAUAACUUUCGAUUCAUCUUGUAUCGAUUGCAUGCCGU-------UUCCAAAGAACAGGAGUGCCAUCGAAAUGCACUGCGAAAAACACACG
((((((((((((......)))))..........(((((.((((.((((-------((.....)))).)).)))).)))))..))).)).))........... ( -23.60)
>DroEre_CAF1 12383 102 - 1
UAAGGUAAUCGAUAGAUUUCGAUUGAUAUUGUAUCGAUUGCGUACUGUUUAUUGUUUAAAAACAACAGAGCUGUCAUCGACAUGCACUGCGAAAAACACACG
....((((((((((.(..((....))...).))))))))))((..(((((.(((((....)))))(((.((((((...)))).)).)))....))))).)). ( -23.80)
>DroYak_CAF1 12478 95 - 1
UGAGGCAAUCGAUAGAUUUCGAUUAAUCUUGCAUCGAUUGCAUACCAU-------UUAAAAACAACACAAGUGUAAUCAAAAUGCACUGUGAAAAACACACG
....((((((((((((((......)))))...))))))))).......-------..........((((.(((((.......)))))))))........... ( -23.70)
>consensus
CGAGGCAAUCGAUAACUUUCGAUUCAUCUUGUAUCGAUUGCAUACCGU_______UUCCAAACAACAGAAGUGCCAUCGAAAUGCACUGCGAAAAACACACG
(((((.((((((......))))))..)))))..(((..(((((......................................)))))...))).......... (-11.56 = -10.96 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:21 2006