| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,147,391 – 3,147,482 |
| Length | 91 |
| Max. P | 0.987666 |
| Location | 3,147,391 – 3,147,482 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.12 |
| Mean single sequence MFE | -26.11 |
| Consensus MFE | -17.27 |
| Energy contribution | -17.08 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3147391 91 - 23771897 AACUUUCAGUCCACUUGCACGCAAACCAGGUGGCUGGACUGAAAGGAUACUAGGAGAAGGCGGAAGGUAGAAUGAACAG---AUAAAAAAC---UCA--- ..(((((((((((...((.(((.......))))))))))))))))........(((....(....)((.......))..---........)---)).--- ( -23.70) >DroVir_CAF1 11179 88 - 1 AACUUUCAGUCUACUUGCACGCAAACCAGGUGGCUGGAUUGGCAGGAAACC-AACGGAGCUGCC-----GACUGAGCACUCUAUAAAAUAC---AGA--- ....(((((((...(((....)))....((..(((...((((.......))-))...)))..))-----)))))))...............---...--- ( -22.30) >DroSec_CAF1 11243 90 - 1 AACUUUCAGUCCACUUGCACGCAAACCAGGUGGCUGGACUGAAAGGAUACU-GGAGAAGGCGAAAGCUAGAAUGAGCAG---AUCAAAAAC---UCA--- ..(((((((((((...((.(((.......))))))))))))))))......-.(((..(((....)))....(((....---.)))....)---)).--- ( -30.30) >DroSim_CAF1 11277 90 - 1 AACUUUCAGUCCACUUGCACGCAAACCAGGUGGCUGGACUGAAAGGAUACU-GGGGAAGGCGAAAGCUAGAAUGAGCAG---ACCAAAAAC---UCA--- ..(((((((((((...((.(((.......))))))))))))))))......-......(((....)))....((((...---........)---)))--- ( -27.40) >DroYak_CAF1 11293 90 - 1 AACUUUCAGUCCACAUGUACACAAACCAGGUGGCUGGACUGGAAGGAUACA-GGCGAAGGCGGCGGUUAGAAGGAUCAG---AUAGAGCGC---UGC--- ..(((((((((((...((.(((.......))))))))))))))))......-.......((((((.((...........---...)).)))---)))--- ( -26.74) >DroAna_CAF1 10921 86 - 1 AACUUUCAGUCUACUUACACCCAAACAAGGUGGCUGGACUGGCAGGAAAAU-GCCGAAGGUGGG-----GAAGG--------AUGAAGGACGUCUGCUUA .((((((((((((....((((.......))))..))))))((((......)-))))))))).((-----(..((--------(((.....))))).))). ( -26.20) >consensus AACUUUCAGUCCACUUGCACGCAAACCAGGUGGCUGGACUGAAAGGAUACU_GGCGAAGGCGGAAG_UAGAAUGAGCAG___AUAAAAAAC___UCA___ ..(((((((((((...((.(((.......))))))))))))))))....................................................... (-17.27 = -17.08 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:20 2006