Locus 1073

Sequence ID 3L_DroMel_CAF1
Location 3,145,346 – 3,145,457
Length 111
Max. P 0.506200
window1658

overview

Window 8

Location 3,145,346 – 3,145,457
Length 111
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 83.80
Mean single sequence MFE -28.41
Consensus MFE -19.88
Energy contribution -21.08
Covariance contribution 1.20
Combinations/Pair 1.20
Mean z-score -1.57
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.506200
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3145346 111 - 23771897
AAGUCUACAAAACUACCUCUAGAAUAGCAUCUCUUGCUGCUCUUCCGGACUCAAUUUUGGUUUCAUCAGGAGAUAGGAUAU--GGUUGAUGUACAUACACUGAUGGGACAACA
.......(((((.....((..(((.((((.(....).)))).)))..)).....)))))((..((((((........((((--.....)))).......))))))..)).... ( -24.96)
>DroSec_CAF1 9209 106 - 1
AAGUCUACAGAACUACCUCUAGAAUAGCAUCUCAUGCUGCUCUUUCGGACU--GUUUUGGUUUCAUCAGGAGAUGGGACAU--GCUUGAUGUACAUAUACUGAUGAGA---CA
.......((((((..((...(((.((((((...)))))).)))...))...--))))))((((((((((...(((..((((--.....)))).)))...)))))))))---). ( -34.90)
>DroSim_CAF1 9239 108 - 1
AAGUCUACAGAACUACCUCUAGAAUAGCAUCUCAUGCUGCUCUUUCGGACUCAGUUUUGGUUUCAUCAGGAGAUGGGACAU--GCUUGAUGUACAUAUACUGAUGAGA---CA
.......(((((((.((...(((.((((((...)))))).)))...))....)))))))((((((((((...(((..((((--.....)))).)))...)))))))))---). ( -34.60)
>DroEre_CAF1 9176 109 - 1
AUGUCUACAGAACUAACUCUAGUAUAGCAUCUCUUUCUGCUCUUCCGGAUUCUGUUUUGGUUUUAUCAGGACCUAGGGCAAAUGGUUGAUGUGCAU----UGAUGGGACAACA
.(((((.(((.((((....))))...((((.((..((((((((...((.(((((............))))))).))))))...))..)).)))).)----))...)))))... ( -26.00)
>DroYak_CAF1 9254 107 - 1
AAGUCUAAAGAACUACCUCUGGUAUAGCAUCUCUCUCUGCUCUUCUGGAUUCAGUUUUGGUUUUAUCAGGAUCUAGGACAA--GGUUGAUGUACAU----UGAUGGGACAACA
..((((.......((((...))))..(((((...(..((...((((((((((................)))))))))))).--.)..)))))....----.....)))).... ( -21.59)
>consensus
AAGUCUACAGAACUACCUCUAGAAUAGCAUCUCUUGCUGCUCUUCCGGACUCAGUUUUGGUUUCAUCAGGAGAUAGGACAU__GGUUGAUGUACAUA_ACUGAUGGGACAACA
.......(((((((...((..(((.((((........)))).)))..))...)))))))((((((((((........((((.......)))).......)))))))))).... (-19.88 = -21.08 +   1.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:19 2006