Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,145,346 – 3,145,457 |
Length | 111 |
Max. P | 0.506200 |
Location | 3,145,346 – 3,145,457 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 83.80 |
Mean single sequence MFE | -28.41 |
Consensus MFE | -19.88 |
Energy contribution | -21.08 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.20 |
Mean z-score | -1.57 |
Structure conservation index | 0.70 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3145346 111 - 23771897 AAGUCUACAAAACUACCUCUAGAAUAGCAUCUCUUGCUGCUCUUCCGGACUCAAUUUUGGUUUCAUCAGGAGAUAGGAUAU--GGUUGAUGUACAUACACUGAUGGGACAACA .......(((((.....((..(((.((((.(....).)))).)))..)).....)))))((..((((((........((((--.....)))).......))))))..)).... ( -24.96) >DroSec_CAF1 9209 106 - 1 AAGUCUACAGAACUACCUCUAGAAUAGCAUCUCAUGCUGCUCUUUCGGACU--GUUUUGGUUUCAUCAGGAGAUGGGACAU--GCUUGAUGUACAUAUACUGAUGAGA---CA .......((((((..((...(((.((((((...)))))).)))...))...--))))))((((((((((...(((..((((--.....)))).)))...)))))))))---). ( -34.90) >DroSim_CAF1 9239 108 - 1 AAGUCUACAGAACUACCUCUAGAAUAGCAUCUCAUGCUGCUCUUUCGGACUCAGUUUUGGUUUCAUCAGGAGAUGGGACAU--GCUUGAUGUACAUAUACUGAUGAGA---CA .......(((((((.((...(((.((((((...)))))).)))...))....)))))))((((((((((...(((..((((--.....)))).)))...)))))))))---). ( -34.60) >DroEre_CAF1 9176 109 - 1 AUGUCUACAGAACUAACUCUAGUAUAGCAUCUCUUUCUGCUCUUCCGGAUUCUGUUUUGGUUUUAUCAGGACCUAGGGCAAAUGGUUGAUGUGCAU----UGAUGGGACAACA .(((((.(((.((((....))))...((((.((..((((((((...((.(((((............))))))).))))))...))..)).)))).)----))...)))))... ( -26.00) >DroYak_CAF1 9254 107 - 1 AAGUCUAAAGAACUACCUCUGGUAUAGCAUCUCUCUCUGCUCUUCUGGAUUCAGUUUUGGUUUUAUCAGGAUCUAGGACAA--GGUUGAUGUACAU----UGAUGGGACAACA ..((((.......((((...))))..(((((...(..((...((((((((((................)))))))))))).--.)..)))))....----.....)))).... ( -21.59) >consensus AAGUCUACAGAACUACCUCUAGAAUAGCAUCUCUUGCUGCUCUUCCGGACUCAGUUUUGGUUUCAUCAGGAGAUAGGACAU__GGUUGAUGUACAUA_ACUGAUGGGACAACA .......(((((((...((..(((.((((........)))).)))..))...)))))))((((((((((........((((.......)))).......)))))))))).... (-19.88 = -21.08 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:19 2006