Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,143,109 – 3,143,222 |
Length | 113 |
Max. P | 0.791948 |
Location | 3,143,109 – 3,143,222 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 86.49 |
Mean single sequence MFE | -18.10 |
Consensus MFE | -12.34 |
Energy contribution | -12.66 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.18 |
Mean z-score | -2.11 |
Structure conservation index | 0.68 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3143109 113 + 23771897 CAAAUUAAU-CUACUCGACAGCCCUACUUCGGUAUUUUGACAAUUUCGGUACAACACAAAUACCGCACAUACAUUAUUGUAUUUCGUGUACGUUAACACCGAAUUAUUCUUCAU .........-.................((((((...(((((......((((.........))))(((((((((....)))))...))))..))))).))))))........... ( -18.40) >DroSec_CAF1 7130 113 + 1 CAAAUUAAU-AUACCCGACAGCCCUAGUUCGGUAUUUUAACAAUUUCGGUACCACACAAAUACCGCACAUACAUUAUUUUAUAUCGUGUACGUUAACACCGAAUUAUUCUUUAU .........-..............(((((((((...(((((.....(((((.........)))))....(((((.((.....)).))))).))))).)))))))))........ ( -18.60) >DroSim_CAF1 7108 113 + 1 CAAAUUAAU-AUACUCGACAGCCCUACUUCGGUAUUUUAACAAUUUCGGUACCACACAAAUACCGCACAUACAUUAUUUUAUAUCGUGUACGUUAACACCGAAUUAUUCUUUAU .........-.................((((((...(((((.....(((((.........)))))....(((((.((.....)).))))).))))).))))))........... ( -15.30) >DroYak_CAF1 7174 109 + 1 CAAAUUAAUCAUACUCGACAACCCUCGUUUGGUUUUUUAACAAUUGGGGUAUAACAUAAAUACCGCAGACA--UAAUUUUAUUUCGUGUAUGAUAACAUUAAAUUAUUCUU--- .......(((((((.(((.((((.......)))).........(((.(((((.......))))).)))...--..........))).))))))).................--- ( -20.10) >consensus CAAAUUAAU_AUACUCGACAGCCCUACUUCGGUAUUUUAACAAUUUCGGUACAACACAAAUACCGCACAUACAUUAUUUUAUAUCGUGUACGUUAACACCGAAUUAUUCUUUAU ........................(((((((((...(((((......((((.........))))((((.................))))..))))).)))))))))........ (-12.34 = -12.66 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:18 2006