| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,133,511 – 3,133,611 |
| Length | 100 |
| Max. P | 0.691250 |
| Location | 3,133,511 – 3,133,611 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.98 |
| Mean single sequence MFE | -38.13 |
| Consensus MFE | -22.19 |
| Energy contribution | -22.97 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3133511 100 - 23771897 CGUCCACCAGGGUGCCAUUGUGCAGCAGCGAGGAGCACACGGAGAUGAAGUUCGGCUGGUGGUUGUUCCACCGCAGGCAGAACUGCUGCACGGACAUGAU-------------------- .((((((....))......(((((((.((.....))............(((((.((((((((.....)))))...))).)))))))))))))))).....-------------------- ( -39.60) >DroVir_CAF1 4536 110 - 1 CGUCCACCAGCGUCCCAUUAUGCAGCAGGGAAGAGCAGACGGAUAUGAAGUUUGGCUGGUGAUUGUUCCAGCGCAGGCAAAACUGCUGCACAGACAUUGUCGGUGUCAGC---------- ....((((.((.((((...........))))...)).....((((....((((((((((........)))))((((.((....)))))).)))))..)))))))).....---------- ( -35.50) >DroGri_CAF1 4822 110 - 1 CAUCGACUAGCGUCCCAUUGUGCAGCAGGGAUGAGCAGACCGAUAUGAAGUUGGGCUGGUGAUUGUUCCAGCGCAGGCAGAACUGCUGCACAGACAUUGUCAGCGUCAAC---------- ....(((..((.......((((((((((...((.((...(((((.....)))))(((((........)))))))...))...))))))))))(((...))).)))))...---------- ( -40.80) >DroWil_CAF1 1 97 - 1 CAUCCACCAAGGUGCCAUUGUGUAGGAGCGAUGAACAGACCGAUAUAAAGUUCGGCUGAUGAUUGUUCCAUCGUAGGCAAAAUUGCUGGACAGACAU----------------------- ..((((.(((..((((..((....((((((((.(.(((.((((........))))))).).))))))))..))..))))...))).)))).......----------------------- ( -33.80) >DroMoj_CAF1 4802 120 - 1 CGUCCACCAGCGUCCCAUUAUGCAGCAGGGAGGAACAGACGGAUAUGAAGUUUGGCUGGUGAUUGUUCCAGCGCAAGCAGAACUGCUGCACAGACAUUGUCAGCGUCAGCGUUGGAAUUG ....(((((((.((((...........))))....(((((.........))))))))))))...((((((((((..((((.....))))...(((.........))).)))))))))).. ( -44.80) >DroAna_CAF1 1 97 - 1 CGUCCACCAGAGUACCAUUGUGCAGCAGCGACGAACAGACCGAGAUGAAGUUGGGCUGGUGGUUGUUCCAGCGCAGGCAGAACUGCUGCACGGACAU----------------------- .((((((....))......(((((((((...((.......)).......((((.(((((........))))).)).))....)))))))))))))..----------------------- ( -34.30) >consensus CGUCCACCAGCGUCCCAUUGUGCAGCAGCGAGGAACAGACCGAUAUGAAGUUCGGCUGGUGAUUGUUCCAGCGCAGGCAGAACUGCUGCACAGACAUUGU____________________ .................(((((((((((...........(((((.....)))))(((((........)))))..........)))))))))))........................... (-22.19 = -22.97 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:15 2006