| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,132,908 – 3,133,003 |
| Length | 95 |
| Max. P | 0.832959 |
| Location | 3,132,908 – 3,133,003 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 58.80 |
| Mean single sequence MFE | -16.39 |
| Consensus MFE | -6.55 |
| Energy contribution | -6.67 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3132908 95 - 23771897 ----AUCAAACAGAAACAACAAC---AUCGGCGGG-----ACUGCGUGUGUAUGUAAUUAUACAGUCGCGAAAAUGAAACACAACACACACACACACUGGAACACAA ----......(((..........---....(((..-----..)))((((((.(((..........(((......)))........))).)))))).)))........ ( -14.47) >DroWil_CAF1 28877 85 - 1 AAAAAAAAAACAGCAACAACAAAAACAACAUUGAG--------ACGUGUGUAUGUAAUUACACAGUCGCGAAAAAUUUAUA-----------CUCACA--CA-CACG ............((.....(((........))).(--------((.((((((......)))))))))))............-----------......--..-.... ( -12.40) >DroAna_CAF1 19705 88 - 1 -------AAACCACAACAACAAC---AUCCGCGUGUUGUUGCUGCGUGUGUAUGUAAUUAUACAGUCGCGAAAACGAAGCA--------ACAAACACCCGCACACU- -------.........(((((((---((....))))))))).((((.((((.((((....))))((.((.........)).--------))..)))).))))....- ( -22.30) >consensus ____A__AAACAGCAACAACAAC___AUCAGCGAG______CUGCGUGUGUAUGUAAUUAUACAGUCGCGAAAAAGAAACA________ACACACACA_GCACACA_ ...........................................(((((((((......))))))..)))...................................... ( -6.55 = -6.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:14 2006