Locus 1068

Sequence ID 3L_DroMel_CAF1
Location 3,132,105 – 3,132,205
Length 100
Max. P 0.546155
window1652

overview

Window 2

Location 3,132,105 – 3,132,205
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 87.40
Mean single sequence MFE -25.86
Consensus MFE -18.88
Energy contribution -18.44
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -1.61
Structure conservation index 0.73
SVM decision value 0.02
SVM RNA-class probability 0.546155
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3132105 100 - 23771897
UGCGAAAGAUUUUUGUGACUAUAUGGCAACUUUGUAUACAACGAGUUGACAGGUCGCUUAAUAGUGUGACCAGUCCUAGAUCAAAACUAGUAUCCCAAUU
.......(((((..(.((((...((.((((((.((.....)))))))).))((((((........))))))))))).))))).................. ( -23.10)
>DroSec_CAF1 21044 100 - 1
UGCGAAAGAUUUUUGUGACUAUAUGGCAACUCUGCGCACAACGAGUUGGCAGGUCGUUUAAUAGUGUGACCACUCCUAGGUCAAGACUAGUUAACCAAUU
.(((((.....)))))((((...((.((((((..........)))))).))))))(((...((((.(((((.......)))))..))))...)))..... ( -25.70)
>DroSim_CAF1 19345 100 - 1
UGCGAAAGAUUUUUGUGACUAUAUGGCAACUCUGCGUACAACGAGUUGGCAGGUCGCUUAAUAGUGUGACCACUCCUAGGUCAAGACUAUUUAACCAAUU
..(....)......((((((...((.((((((..........)))))).))))))))..((((((.(((((.......)))))..))))))......... ( -28.00)
>DroEre_CAF1 19717 100 - 1
UGCGAAAGAUUUUUGUGACUAUAUGGCAACUCUGUAUAAAUCGAGUUGGCAUGUCGCUGAACAGUGUGACCGCUCACAGAUCAAAACUAGUUACCAAAUU
..(....)..(((.(((((((.(((.((((((.((....)).)))))).)))(((((........))))).................))))))).))).. ( -23.90)
>DroYak_CAF1 22374 100 - 1
UGCGAAAGAUUUUUGUGACUAUAUGGCAACUUUGCGUAAGACGAGUUGGCAGGUCGCUGAACAGUGUGACCACUCACAGAACAAAACUAUAUACCAAAUU
..(....)..((((((((.....((.((((((..(....)..)))))).))((((((........))))))..))))))))................... ( -28.60)
>consensus
UGCGAAAGAUUUUUGUGACUAUAUGGCAACUCUGCGUACAACGAGUUGGCAGGUCGCUUAAUAGUGUGACCACUCCUAGAUCAAAACUAGUUACCCAAUU
..(....)..(((((...((...((.((((((..........)))))).))((((((........))))))......))..))))).............. (-18.88 = -18.44 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:13 2006