Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,132,105 – 3,132,205 |
Length | 100 |
Max. P | 0.546155 |
Location | 3,132,105 – 3,132,205 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 87.40 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -18.88 |
Energy contribution | -18.44 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -1.61 |
Structure conservation index | 0.73 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.546155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3132105 100 - 23771897 UGCGAAAGAUUUUUGUGACUAUAUGGCAACUUUGUAUACAACGAGUUGACAGGUCGCUUAAUAGUGUGACCAGUCCUAGAUCAAAACUAGUAUCCCAAUU .......(((((..(.((((...((.((((((.((.....)))))))).))((((((........))))))))))).))))).................. ( -23.10) >DroSec_CAF1 21044 100 - 1 UGCGAAAGAUUUUUGUGACUAUAUGGCAACUCUGCGCACAACGAGUUGGCAGGUCGUUUAAUAGUGUGACCACUCCUAGGUCAAGACUAGUUAACCAAUU .(((((.....)))))((((...((.((((((..........)))))).))))))(((...((((.(((((.......)))))..))))...)))..... ( -25.70) >DroSim_CAF1 19345 100 - 1 UGCGAAAGAUUUUUGUGACUAUAUGGCAACUCUGCGUACAACGAGUUGGCAGGUCGCUUAAUAGUGUGACCACUCCUAGGUCAAGACUAUUUAACCAAUU ..(....)......((((((...((.((((((..........)))))).))))))))..((((((.(((((.......)))))..))))))......... ( -28.00) >DroEre_CAF1 19717 100 - 1 UGCGAAAGAUUUUUGUGACUAUAUGGCAACUCUGUAUAAAUCGAGUUGGCAUGUCGCUGAACAGUGUGACCGCUCACAGAUCAAAACUAGUUACCAAAUU ..(....)..(((.(((((((.(((.((((((.((....)).)))))).)))(((((........))))).................))))))).))).. ( -23.90) >DroYak_CAF1 22374 100 - 1 UGCGAAAGAUUUUUGUGACUAUAUGGCAACUUUGCGUAAGACGAGUUGGCAGGUCGCUGAACAGUGUGACCACUCACAGAACAAAACUAUAUACCAAAUU ..(....)..((((((((.....((.((((((..(....)..)))))).))((((((........))))))..))))))))................... ( -28.60) >consensus UGCGAAAGAUUUUUGUGACUAUAUGGCAACUCUGCGUACAACGAGUUGGCAGGUCGCUUAAUAGUGUGACCACUCCUAGAUCAAAACUAGUUACCCAAUU ..(....)..(((((...((...((.((((((..........)))))).))((((((........))))))......))..))))).............. (-18.88 = -18.44 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:13 2006