| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,124,056 – 3,124,159 |
| Length | 103 |
| Max. P | 0.526732 |
| Location | 3,124,056 – 3,124,159 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 80.87 |
| Mean single sequence MFE | -26.28 |
| Consensus MFE | -16.47 |
| Energy contribution | -15.89 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3124056 103 - 23771897 UCACCGAGAGAAGCUUUUCGCCGUGAGUGCGAU-GGAAAUGUGGAAAAGCUGUUUCAUUCAUAAAACACGGCGAUAGGGCGCAGAAGCGAACAGGUGCCAGAGA .((((.......(((((((((((((.(((.(((-((((..((......))..))))))))))....)))))))).)))))((....)).....))))....... ( -32.00) >DroSec_CAF1 13006 95 - 1 UCACCGAGAGAAGCUUUUCGCC--------GAU-AGAAAAGCGGAAAAGCUGCUUCAUUCAUAAAACACGGCGAUAGGGCGCAGAAGUGAACAGGUGCCAGAGA .(((((((.((((((((((((.--------...-......)))))))....))))).)))......(((.(((......)))....)))....))))....... ( -25.40) >DroSim_CAF1 11352 95 - 1 UCACCGAGAGAAGCUUUUCGCC--------GAU-AGAAAAGCGGAAAAGCUGUUUCAUUCAUAAAACACGGCGAUAGGGCGCAGAAGUGAACAGGUGCCAGAGA .((((((((..((((((((((.--------...-......)).)))))))).))))..........(((.(((......)))....)))....))))....... ( -25.10) >DroEre_CAF1 11638 104 - 1 UCACCGAGAGAAGCUUUUCGCUGUGAGAAAAGUGAGAAAAGUAGAAAAGCUGUUUCAUUCAUAAAACACUGCGAUAGGGCGCAGAAGCGAACAGGUGCCAGAGA .(((((((.(((((((((((((........)))))))).(((......)))))))).)))........(((((......))))).........))))....... ( -27.40) >DroYak_CAF1 13415 103 - 1 UCAACGAAAGUAGCUUUUUGCCGUGAGUCAAAU-AGAGAAGCAGAAAAGCUGUUUCAUUCAUAAAACACUGCGAUAGGGCGCAGAAGCGAACAGGUGCCAGAGA .........(((.((.(((((.(((((((....-.))(((((((.....))))))).)))))......(((((......)))))..))))).)).)))...... ( -26.60) >DroAna_CAF1 11441 95 - 1 CCCUAGGACUAAGCUUUUGGUCCCU-----AAU-UGGAAA---UAAAAGCUCCUUCAUUCAUAAAAUUCACCGUUAGGGCGCAGAAGCGAACAGGUGCCAAAGU .....(((((..((((((((.((((-----(((-.((((.---.......................))).).)))))))).))))))).....))).))..... ( -21.16) >consensus UCACCGAGAGAAGCUUUUCGCCGUG_____AAU_AGAAAAGCGGAAAAGCUGUUUCAUUCAUAAAACACGGCGAUAGGGCGCAGAAGCGAACAGGUGCCAGAGA .(((((((...((((((((........................))))))))..)))....................(..(((....)))..).))))....... (-16.47 = -15.89 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:08 2006