Locus 1064

Sequence ID 3L_DroMel_CAF1
Location 3,120,516 – 3,120,606
Length 90
Max. P 0.500000
window1646

overview

Window 6

Location 3,120,516 – 3,120,606
Length 90
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 84.23
Mean single sequence MFE -30.98
Consensus MFE -24.53
Energy contribution -25.48
Covariance contribution 0.95
Combinations/Pair 1.17
Mean z-score -1.49
Structure conservation index 0.79
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3120516 90 - 23771897
UCACAUGACCUUGGU-----------------GCCAGGGAAUGCUCUCCAUUAGCCACCAGUC---GUCA---GCCAGUCCGCAGUUCAUGUGGGCUGACAUUUGGCAUCAGC
..........(((((-----------------((((((((......)))..............---((((---(((....((((.....)))))))))))..)))))))))). ( -31.00)
>DroSec_CAF1 9358 90 - 1
UCACAUGACCUUGGU-----------------GCCAGGGAAUGCUCUCCAUUAGCCACCAGUC---GUCA---GCCAGUCCGCUUUUCAUGUGGGCUGACAUUUGGCAUCAGC
..........(((((-----------------((((((((......)))..............---((((---(((....(((.......))))))))))..)))))))))). ( -29.50)
>DroSim_CAF1 7700 90 - 1
UCACAUGACCUUGGU-----------------GCCAGGGAAUGCUCUCCAUUAGCCACCAGUC---GUCA---GCCAGUCCGCUUUUCAUGUGGGCUGACAUUUGGCAUCAGC
..........(((((-----------------((((((((......)))..............---((((---(((....(((.......))))))))))..)))))))))). ( -29.50)
>DroEre_CAF1 8012 90 - 1
UCACAUGACCUUGGU-----------------GCCACGGAAUGCUCUCCAUUAGCCACCAGUC---GUCA---GCAAGUCCGCCGUUCAUGUGGGCUGACAUUUGGCAUCAGC
..........(((((-----------------((((.(((......)))..............---((((---((....((((.......))))))))))...))))))))). ( -27.70)
>DroYak_CAF1 9768 93 - 1
UCACAUGACCUUGGU-----------------GCCACGGAAUGCUCUCCAUUAGCCACCAGUCGUCGUCA---GCCAGUCCGCCGUUCAUGUGGGCUGACAUUUGGCAUCAAC
..........(((((-----------------((((.(((......))).................((((---(((....(((.......))))))))))...))))))))). ( -28.00)
>DroAna_CAF1 7213 110 - 1
UCAUAUGACCUUGGCUCGGGAUGUCAUCUUGGGCGAGGGAAUGCUCUCCAUUAGCCGCCAGUC---GGCAGAAGCGGGUCCAUUUCUCAUAUGGGCUGACAUUCAGCGUCACA
((((((((((((.(((((((((...))))))))).))))((((..((((.((.((((.....)---))).)).).)))..))))..))))))))((((.....))))...... ( -40.20)
>consensus
UCACAUGACCUUGGU_________________GCCAGGGAAUGCUCUCCAUUAGCCACCAGUC___GUCA___GCCAGUCCGCUGUUCAUGUGGGCUGACAUUUGGCAUCAGC
.....((((((((((((((((.....)))))))))))))..............((((...(((.............(((((((.......))))))))))...)))).))).. (-24.53 = -25.48 +   0.95) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:07 2006