Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,120,516 – 3,120,606 |
Length | 90 |
Max. P | 0.500000 |
Location | 3,120,516 – 3,120,606 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 84.23 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -24.53 |
Energy contribution | -25.48 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.17 |
Mean z-score | -1.49 |
Structure conservation index | 0.79 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3120516 90 - 23771897 UCACAUGACCUUGGU-----------------GCCAGGGAAUGCUCUCCAUUAGCCACCAGUC---GUCA---GCCAGUCCGCAGUUCAUGUGGGCUGACAUUUGGCAUCAGC ..........(((((-----------------((((((((......)))..............---((((---(((....((((.....)))))))))))..)))))))))). ( -31.00) >DroSec_CAF1 9358 90 - 1 UCACAUGACCUUGGU-----------------GCCAGGGAAUGCUCUCCAUUAGCCACCAGUC---GUCA---GCCAGUCCGCUUUUCAUGUGGGCUGACAUUUGGCAUCAGC ..........(((((-----------------((((((((......)))..............---((((---(((....(((.......))))))))))..)))))))))). ( -29.50) >DroSim_CAF1 7700 90 - 1 UCACAUGACCUUGGU-----------------GCCAGGGAAUGCUCUCCAUUAGCCACCAGUC---GUCA---GCCAGUCCGCUUUUCAUGUGGGCUGACAUUUGGCAUCAGC ..........(((((-----------------((((((((......)))..............---((((---(((....(((.......))))))))))..)))))))))). ( -29.50) >DroEre_CAF1 8012 90 - 1 UCACAUGACCUUGGU-----------------GCCACGGAAUGCUCUCCAUUAGCCACCAGUC---GUCA---GCAAGUCCGCCGUUCAUGUGGGCUGACAUUUGGCAUCAGC ..........(((((-----------------((((.(((......)))..............---((((---((....((((.......))))))))))...))))))))). ( -27.70) >DroYak_CAF1 9768 93 - 1 UCACAUGACCUUGGU-----------------GCCACGGAAUGCUCUCCAUUAGCCACCAGUCGUCGUCA---GCCAGUCCGCCGUUCAUGUGGGCUGACAUUUGGCAUCAAC ..........(((((-----------------((((.(((......))).................((((---(((....(((.......))))))))))...))))))))). ( -28.00) >DroAna_CAF1 7213 110 - 1 UCAUAUGACCUUGGCUCGGGAUGUCAUCUUGGGCGAGGGAAUGCUCUCCAUUAGCCGCCAGUC---GGCAGAAGCGGGUCCAUUUCUCAUAUGGGCUGACAUUCAGCGUCACA ((((((((((((.(((((((((...))))))))).))))((((..((((.((.((((.....)---))).)).).)))..))))..))))))))((((.....))))...... ( -40.20) >consensus UCACAUGACCUUGGU_________________GCCAGGGAAUGCUCUCCAUUAGCCACCAGUC___GUCA___GCCAGUCCGCUGUUCAUGUGGGCUGACAUUUGGCAUCAGC .....((((((((((((((((.....)))))))))))))..............((((...(((.............(((((((.......))))))))))...)))).))).. (-24.53 = -25.48 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:07 2006