Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,114,511 – 3,114,604 |
Length | 93 |
Max. P | 0.525764 |
Location | 3,114,511 – 3,114,604 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 84.51 |
Mean single sequence MFE | -20.40 |
Consensus MFE | -17.59 |
Energy contribution | -17.62 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.06 |
Mean z-score | -1.39 |
Structure conservation index | 0.86 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3114511 93 - 23771897 GUAUC-AGAUUUUAACUCUUUCCUCUUU--------UUCGCACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC .....-......................--------..........(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -17.70) >DroSec_CAF1 3497 93 - 1 ACAUC-AGAUUUUAACUCUUUUCUGUUU--------UUCAAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC .....-...............((((((.--------....))))))(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -22.30) >DroSim_CAF1 1650 93 - 1 ACAUC-AGAUUUUAACUCUUUCCUGUUU--------UUCAAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC .....-................(((((.--------....))))).(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -21.10) >DroEre_CAF1 1653 92 - 1 GUAUC-AGGUCUUAA-UCUUCUCUGCUU--------CGCCAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC .....-.........-.....((((...--------......))))(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -19.10) >DroYak_CAF1 3539 96 - 1 GUAUC-AGAUCUUAA-UCUUUACUGCUU----CUUCCGCAAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUUAUGAACGGCCUGGUCAUGGGC (((..-((((....)-))).)))(((..----.....)))......(((...(((((.(((((..(((........)))....)))))..)))))...))). ( -20.80) >DroAna_CAF1 1630 100 - 1 UCAUCUAGAUCUUAU--CUAAUCUAUUGUCCACUAUCGUCCACAGACCCUCAACCAGACCUUCCCGGAUCACACAUUCCUGAUGAACGGCCUGGUGAUGGGC .....(((((.....--...)))))((((..((....))..)))).(((...(((((.(((((..(((........)))....))).)).)))))...))). ( -21.40) >consensus GCAUC_AGAUCUUAA_UCUUUUCUGUUU________CGCAAACAGACUCUCAACCAGACGUUCCCGGAUCACACAUUCCUAAUGAACGGCCUGGUCAUGGGC ..............................................(((...(((((.(((((..(((........)))....)))))..)))))...))). (-17.59 = -17.62 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:06 2006