Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 364,101 – 364,193 |
Length | 92 |
Max. P | 0.961385 |
Location | 364,101 – 364,193 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.43 |
Mean single sequence MFE | -25.47 |
Consensus MFE | -17.99 |
Energy contribution | -18.94 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.71 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 364101 92 + 23771897 UGGCGAGUU--UUUGCAUCCAUCACGAUUACUCGGACACACGAGGCUUCCAUUUCAAAU--------AGGAACGUGAUGACCAAACGCAAUCCAC------AUCCAAA ..(((.((.--...))...(((((((....((((......))))..((((.........--------.)))))))))))......))).......------....... ( -22.20) >DroPse_CAF1 21089 94 + 1 UAGCAGGUUCAUUUCCAGCCAUCACGUUUACUCGGACACACGAGGCGUCCAUUCCAAGCAGCUCUGAAGGAACGUGAUAGCCACAA--------A------AUAUAAA ..((.((((.......))))(((((((((.((((......))))((...........))..........))))))))).)).....--------.------....... ( -21.70) >DroSec_CAF1 18368 92 + 1 UGGCGAGUU--UUUGCAUCCAUCACGUUUACUCGGACACACGAGGCGUCCAUUUCAAAU--------AGGAACGUGAUGGCCAAACGCAAUCCAC------AUCCAAA (((...((.--((((...(((((((((...((((......))))...(((.........--------.)))))))))))).)))).))...))).------....... ( -25.40) >DroSim_CAF1 19047 92 + 1 UGGCGAGUU--UUUGCAUCCAUCACGUUUACUCGGACACACUCGGCGUCCAUUUCAAAU--------AGGAACGUGAUGGCCAAACNNNNNNNNN------NNNNNNN ((((..((.--...))...((((((((((....((((.(.....).))))....(....--------.)))))))))))))))............------....... ( -23.50) >DroEre_CAF1 19647 98 + 1 UGGCGAGUU--GUUGCAUCCAUCACGUUUACUCGGACGCACGAGGCGUCCAUUUCAAAU--------AGGAACGUGAUGGCCAAAGGCAAUCCACAUCCACAUCCAAA (((...(((--(((....(((((((((((....((((((.....))))))....(....--------.)))))))))))).....))))))))).............. ( -31.40) >DroYak_CAF1 19744 98 + 1 UGGUGAGCU--GUUGCAUCCAUCACGUUUACUCGGACACACGAGGCGUCCAUUUCAAAU--------AGGAACGUGAUGGCCAAAGGCAAUCUACAUUCACAUCCAAA ..(((((.(--(((((..(((((((((...((((......))))...(((.........--------.))))))))))))......)))....))))))))....... ( -28.60) >consensus UGGCGAGUU__UUUGCAUCCAUCACGUUUACUCGGACACACGAGGCGUCCAUUUCAAAU________AGGAACGUGAUGGCCAAACGCAAUCCAC______AUCCAAA ((((..((......))...((((((((...((((......))))...(((..................)))))))))))))))......................... (-17.99 = -18.94 + 0.95)
Location | 364,101 – 364,193 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 77.43 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -19.30 |
Energy contribution | -19.22 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.17 |
Mean z-score | -1.58 |
Structure conservation index | 0.67 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 364101 92 - 23771897 UUUGGAU------GUGGAUUGCGUUUGGUCAUCACGUUCCU--------AUUUGAAAUGGAAGCCUCGUGUGUCCGAGUAAUCGUGAUGGAUGCAAA--AACUCGCCA ..(((..------((...(((((((....(((((((((((.--------.........))))..((((......))))....)))))))))))))).--.))...))) ( -25.00) >DroPse_CAF1 21089 94 - 1 UUUAUAU------U--------UUGUGGCUAUCACGUUCCUUCAGAGCUGCUUGGAAUGGACGCCUCGUGUGUCCGAGUAAACGUGAUGGCUGGAAAUGAACCUGCUA .......------(--------((.(((((((((((((((..((....))...))).(((((((.....))))))).....)))))))))))).)))........... ( -29.80) >DroSec_CAF1 18368 92 - 1 UUUGGAU------GUGGAUUGCGUUUGGCCAUCACGUUCCU--------AUUUGAAAUGGACGCCUCGUGUGUCCGAGUAAACGUGAUGGAUGCAAA--AACUCGCCA ..(((..------((...((((((....((((((((((..(--------((((.....((((((.....))))))))))))))))))))))))))).--.))...))) ( -31.30) >DroSim_CAF1 19047 92 - 1 NNNNNNN------NNNNNNNNNGUUUGGCCAUCACGUUCCU--------AUUUGAAAUGGACGCCGAGUGUGUCCGAGUAAACGUGAUGGAUGCAAA--AACUCGCCA .......------..........((((.((((((((((..(--------((((.....((((((.....)))))))))))))))))))))...))))--......... ( -24.80) >DroEre_CAF1 19647 98 - 1 UUUGGAUGUGGAUGUGGAUUGCCUUUGGCCAUCACGUUCCU--------AUUUGAAAUGGACGCCUCGUGCGUCCGAGUAAACGUGAUGGAUGCAAC--AACUCGCCA ........(((..((...((((......((((((((((..(--------((((.....((((((.....)))))))))))))))))))))..)))).--.))...))) ( -31.30) >DroYak_CAF1 19744 98 - 1 UUUGGAUGUGAAUGUAGAUUGCCUUUGGCCAUCACGUUCCU--------AUUUGAAAUGGACGCCUCGUGUGUCCGAGUAAACGUGAUGGAUGCAAC--AGCUCACCA .......((((.(((....(((......((((((((((..(--------((((.....((((((.....)))))))))))))))))))))..)))))--)..)))).. ( -29.40) >consensus UUUGGAU______GUGGAUUGCGUUUGGCCAUCACGUUCCU________AUUUGAAAUGGACGCCUCGUGUGUCCGAGUAAACGUGAUGGAUGCAAA__AACUCGCCA ............................((((((((((.(.............)...(((((((.....)))))))....)))))))))).................. (-19.30 = -19.22 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:35 2006