Locus 1059

Sequence ID 3L_DroMel_CAF1
Location 3,108,250 – 3,108,350
Length 100
Max. P 0.896016
window1639

overview

Window 9

Location 3,108,250 – 3,108,350
Length 100
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 90.22
Mean single sequence MFE -25.27
Consensus MFE -19.96
Energy contribution -20.40
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -2.22
Structure conservation index 0.79
SVM decision value 0.99
SVM RNA-class probability 0.896016
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3108250 100 - 23771897
GAUUAUGGCUCU--AUGGAUAGGGGGAGAGCGGUAAUUGUUGUUAUUAAUGCAACCUUCACUUUGUAUUUAAUUCUUUUGUUUAUACAAGCCAUAAGCAACC
..((((((((.(--(((((((((((((....((((((....))))))(((((((........)))))))...))))))))))))))..))))))))...... ( -25.30)
>DroSec_CAF1 41217 99 - 1
GAUUGUGGCUCUGUAUGGAUGGGUUG---GGGGGAAUUGUUGUUAUUAAUGCAACCUUAACUUUGUAUUUAAUUCUUUUGUUUAUACAAGCCAUAAGCAACC
..((((((((.(((((((((((((((---(((...((((.......))))....)))))))))................)))))))))))))))))...... ( -25.99)
>DroSim_CAF1 45584 99 - 1
GAUUGUGGCUCUGUAUGGAUGGGUUG---GGGGGAAUUGUUGUUAUUAAUGCAACCUUCACUUUGUAUUUAAUUCUUUUGUUUAUACAAGCCAUAAGCAACC
..((((((((.(((((((((..(.(.---.((.(((..(((((.......))))).))).))..)...........)..)))))))))))))))))...... ( -24.90)
>DroYak_CAF1 45205 93 - 1
GAUUGUGGCUCUGUAUGGAUGA---------GGAAAUUGUUGUUAUUAAUGCAACCUUCACUUUGUAUUUAAUUCUUUUGUUUAUACAAGCCAUAAGCAAAC
..((((((((.((((((((..(---------(..(((((........(((((((........))))))))))))..))..))))))))))))))))...... ( -24.90)
>consensus
GAUUGUGGCUCUGUAUGGAUGGGUUG___GGGGGAAUUGUUGUUAUUAAUGCAACCUUCACUUUGUAUUUAAUUCUUUUGUUUAUACAAGCCAUAAGCAACC
..((((((((.(((((((((((.........((((((((........(((((((........))))))))))))))))))))))))))))))))))...... (-19.96 = -20.40 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:01 2006