Locus 1057

Sequence ID 3L_DroMel_CAF1
Location 3,105,592 – 3,105,688
Length 96
Max. P 0.591900
window1637

overview

Window 7

Location 3,105,592 – 3,105,688
Length 96
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 80.25
Mean single sequence MFE -17.75
Consensus MFE -11.30
Energy contribution -10.92
Covariance contribution -0.38
Combinations/Pair 1.24
Mean z-score -1.73
Structure conservation index 0.64
SVM decision value 0.12
SVM RNA-class probability 0.591900
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3105592 96 - 23771897
UUAAAUAAACAUGUCGCACAGACACUUUAUUCCUU------------ACAAAUG----UACCUACAUAAUAUAGGUAGGUAUAUUUAUUUAUGCGUUUAGGACUCGCACACA
...((((((..((((.....)))).))))))....------------..(((((----(((((((.........)))))))))))).....((((.........)))).... ( -21.10)
>DroSec_CAF1 38546 99 - 1
UUAAACAAACACGUCGCACAGACACUUCAUUCCUUCCA---------ACAAAUG----UACCUACAAAACAUACGUAAAUAUAUUUAUUUAUGCGGUUAGGACUCGCAGACG
...........((((((...((....))..((((.((.---------....(((----(.........)))).((((((((....)))))))).))..))))...)).)))) ( -17.20)
>DroSim_CAF1 41052 99 - 1
UUAAACAAACAGGUCGCACAGACACAUCAUUCCUUCCA---------ACAAAUU----UACCUACAAAACAUACGUAAAUAUAUUUAUUUAUGCAGUUAGGACUCGCAGACA
............(((((...((....))..........---------.......----..((((....((...((((((((....))))))))..))))))....)).))). ( -11.90)
>DroYak_CAF1 42519 110 - 1
UUAAACAAACAGGUCGC--AGACACAUAAUUUCGUUUAUAUGUACAUACAUAUGUAAGUACCUGCAUAACAUAGGUAGGAAUAUUUAUUUAUGCGGUUAGGACUCGCACACA
...........((((..--......................((((.(((....))).))))((((((((.(((((((....)))))))))))))))....))))........ ( -20.80)
>consensus
UUAAACAAACAGGUCGCACAGACACAUCAUUCCUUCCA_________ACAAAUG____UACCUACAAAACAUACGUAAAUAUAUUUAUUUAUGCGGUUAGGACUCGCACACA
............(((.....))).....................................((((.....((((((((((....))))))))))....))))........... (-11.30 = -10.92 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:58 2006