Locus 1056

Sequence ID 3L_DroMel_CAF1
Location 3,101,214 – 3,101,309
Length 95
Max. P 0.649393
window1636

overview

Window 6

Location 3,101,214 – 3,101,309
Length 95
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.00
Mean single sequence MFE -39.13
Consensus MFE -28.48
Energy contribution -29.53
Covariance contribution 1.06
Combinations/Pair 1.19
Mean z-score -1.82
Structure conservation index 0.73
SVM decision value 0.24
SVM RNA-class probability 0.649393
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3101214 95 + 23771897
--------AGGGGCAGCCGCAAUAAGCCUGCUGCCCGCCGGAGCAGGUGACUAUAGGCGGUGGCACAUACGGAGCACCCGUGCAAAUGGGACAGCUUUGGGUU
--------..(((((((.((.....))..)))))))((((..((((....))....))..)))).....((((((.(((((....)))))...)))))).... ( -40.40)
>DroPse_CAF1 32489 94 + 1
UUCUUUGCCGGGGCACGCGCAAUAGGCCUGCUGCCCACCGGCACAGGUU---------UGUUGCACAUAGGGCAAUCCCGUACAUACGGGACAGCUUUGGGGU
.......(((((((..(.((((((((((((.((((....))))))))))---------)))))).).........((((((....))))))..)))))))... ( -43.60)
>DroSec_CAF1 34170 95 + 1
--------AGGGGCAGCCGCAAUAAGCCUGCUGCCCGCCGGAGCAGGUGACUAUAGGCGGUGGCACAUACGGAGCACCCGUGCAAAUGGGACAGCUUUGGGUU
--------..(((((((.((.....))..)))))))((((..((((....))....))..)))).....((((((.(((((....)))))...)))))).... ( -40.40)
>DroSim_CAF1 36637 95 + 1
--------AGGGGCAGCCGCAAUAAGCCUGCUGCCCGCCGGAGCAGGUGACUAUAGGCGGUGGCACAUACGGAGCACCCGUGCAAAUAGGACAGCUUUGGGUU
--------..(((((((.((.....))..))))))).(((((((..(((.((((.....))))))).(((((.....)))))...........)))))))... ( -37.40)
>DroEre_CAF1 38683 95 + 1
--------CAGAGCAGCCGCAAUAAGCCUGCUGCCCGCCAGAGCAGGCAACUACAGGCGGUGGCACAUAUGGAGCUCCCGUGCAAAUGGGACAUCUUUGGGUU
--------(((((..(((((.....(((((.((((.((....)).))))....))))).))))).........(.((((((....)))))))..))))).... ( -36.00)
>DroYak_CAF1 38099 95 + 1
--------CGGGGCAGGCGCAAUAAGUCUGCUGUCCGCCGGAGCAGGCAACUACAGGCGGUGGCACAUACGGAGCACCCGUGCAAAUGGGACAGCUUUGGGUU
--------...(((((((.......)))))))((((((((..(.((....)).)...)))))).))...((((((.(((((....)))))...)))))).... ( -37.00)
>consensus
________AGGGGCAGCCGCAAUAAGCCUGCUGCCCGCCGGAGCAGGUGACUAUAGGCGGUGGCACAUACGGAGCACCCGUGCAAAUGGGACAGCUUUGGGUU
..........(((((((.((.....))..))))))).(((((((..((.(((......))).))............(((((....)))))...)))))))... (-28.48 = -29.53 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:57 2006