Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,099,771 – 3,099,869 |
Length | 98 |
Max. P | 0.691727 |
Location | 3,099,771 – 3,099,869 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 84.45 |
Mean single sequence MFE | -32.21 |
Consensus MFE | -19.98 |
Energy contribution | -19.82 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.09 |
Mean z-score | -2.19 |
Structure conservation index | 0.62 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3099771 98 + 23771897 --GGAGGCC----------AUUGAUGGGCUUACGAAGAGGAUAAGCUUUGAGUAAUGAGCUG--UGGGCUUGUCUGCUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUCGG --.(((.((----------(....))).))).((((((((((((((((........))))).--(((((..((((......))))...)))))....))))))...))))). ( -29.60) >DroSec_CAF1 32697 98 + 1 --GGAGGCC----------AUCGGUGGGCUUACUGGGAGGAUAAGCUUUGAGUAAUGAGCUG--GGGGCUUGUCUGCUAAGAGAUGGUGUCCAGAAGUGUCUUUAACUUCGG --(((.(((----------(((....(((.........(((((((((((.(((.....))).--))))))))))))))....)))))).))).(((((.......))))).. ( -39.90) >DroSim_CAF1 35176 98 + 1 --GGAGGCC----------AUCGGUGGGCUUACUGGGAGGAUAAGCUUUGAGUAAUGAGCUG--UGGGCUUGUCUGCUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUUGG --(((.((.----------(((((..((((((((.((((......)))).))))).((((..--...)))))))..))....))).)).))).(((((.......))))).. ( -28.60) >DroEre_CAF1 37203 110 + 1 UCGAAAGCCAUCGAAAGCCAUCGGUGGACUUACUGGGAGGAUAAGCUUUGAGUAAUGAGCUG--UGGGCUUGUCUGGUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUUGG .(.(((((((((((......)))))))((((.(((((.((((((((((..(((.....))).--.))))))))))..............)))))))))........)))).) ( -31.96) >DroYak_CAF1 36639 93 + 1 --GGAGGCCA-----GGC------------CACUGGGAGGAUAAGCUUUGAGUAAUGAGCUGUCUGGGCUUGUCUGUUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUUGG --((((.(((-----(..------------..))))((((((((((((........))))).(((((((..((((......))))...)))))))..)))))))..)))).. ( -31.00) >consensus __GGAGGCC__________AUCGGUGGGCUUACUGGGAGGAUAAGCUUUGAGUAAUGAGCUG__UGGGCUUGUCUGCUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUUGG ......................................(((((..((((.(((((..((((.....))))..).)))).))))....))))).(((((.......))))).. (-19.98 = -19.82 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:56 2006