Locus 1055

Sequence ID 3L_DroMel_CAF1
Location 3,099,771 – 3,099,869
Length 98
Max. P 0.691727
window1635

overview

Window 5

Location 3,099,771 – 3,099,869
Length 98
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 84.45
Mean single sequence MFE -32.21
Consensus MFE -19.98
Energy contribution -19.82
Covariance contribution -0.16
Combinations/Pair 1.09
Mean z-score -2.19
Structure conservation index 0.62
SVM decision value 0.33
SVM RNA-class probability 0.691727
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3099771 98 + 23771897
--GGAGGCC----------AUUGAUGGGCUUACGAAGAGGAUAAGCUUUGAGUAAUGAGCUG--UGGGCUUGUCUGCUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUCGG
--.(((.((----------(....))).))).((((((((((((((((........))))).--(((((..((((......))))...)))))....))))))...))))). ( -29.60)
>DroSec_CAF1 32697 98 + 1
--GGAGGCC----------AUCGGUGGGCUUACUGGGAGGAUAAGCUUUGAGUAAUGAGCUG--GGGGCUUGUCUGCUAAGAGAUGGUGUCCAGAAGUGUCUUUAACUUCGG
--(((.(((----------(((....(((.........(((((((((((.(((.....))).--))))))))))))))....)))))).))).(((((.......))))).. ( -39.90)
>DroSim_CAF1 35176 98 + 1
--GGAGGCC----------AUCGGUGGGCUUACUGGGAGGAUAAGCUUUGAGUAAUGAGCUG--UGGGCUUGUCUGCUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUUGG
--(((.((.----------(((((..((((((((.((((......)))).))))).((((..--...)))))))..))....))).)).))).(((((.......))))).. ( -28.60)
>DroEre_CAF1 37203 110 + 1
UCGAAAGCCAUCGAAAGCCAUCGGUGGACUUACUGGGAGGAUAAGCUUUGAGUAAUGAGCUG--UGGGCUUGUCUGGUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUUGG
.(.(((((((((((......)))))))((((.(((((.((((((((((..(((.....))).--.))))))))))..............)))))))))........)))).) ( -31.96)
>DroYak_CAF1 36639 93 + 1
--GGAGGCCA-----GGC------------CACUGGGAGGAUAAGCUUUGAGUAAUGAGCUGUCUGGGCUUGUCUGUUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUUGG
--((((.(((-----(..------------..))))((((((((((((........))))).(((((((..((((......))))...)))))))..)))))))..)))).. ( -31.00)
>consensus
__GGAGGCC__________AUCGGUGGGCUUACUGGGAGGAUAAGCUUUGAGUAAUGAGCUG__UGGGCUUGUCUGCUAAGAGAUUGUGUCCAGAAGUGUCUUUAACUUUGG
......................................(((((..((((.(((((..((((.....))))..).)))).))))....))))).(((((.......))))).. (-19.98 = -19.82 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:56 2006