| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,096,832 – 3,096,949 |
| Length | 117 |
| Max. P | 0.500000 |
| Location | 3,096,832 – 3,096,949 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -33.90 |
| Consensus MFE | -23.19 |
| Energy contribution | -24.67 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3096832 117 - 23771897 ACAAUCUUCAUUAGCAUUACGUGGCGUCAAACGCGAUCUUAUGGUGAUUCUAAUCGCGGACUGCACGCAUAGCGAGUGCCAAGAUUUCUACCGUGCGAAUGAGAUCAAGAUGCUGGA ..........((((((((.....(((.....)))((((((((.(((((....)))))....(((((((((.....))))..((....))...))))).))))))))..)))))))). ( -33.80) >DroSec_CAF1 29729 117 - 1 ACAAUCCUCAUUAGCGUUACGUGGGGUCAAACGCGAUCUCAUGGUGAUUCUAACCUCUGACUGCACGCAAAGGGAGUGCCAAGAUUUCUACCGUGCGAAUGAGAUCAUGAUGCUGGA ..........(((((((((.(((........)))(((((((((((.......)))......((((((....((((((......))))))..)))))).)))))))).))))))))). ( -35.20) >DroSim_CAF1 32209 117 - 1 ACAAUCCUCAUUAGCGUUACGUGGGGUCAAACGCGAUCUCAUGGUGAUUCUAACCUCGGAAUGCACGCAAAAGGAGUGCCAAGAUUUCUACCGUGCGAAUGAGAUCAUGAUGCUGGA ..........(((((((((.(((........)))(((((((((((.......)))......((((((....((((((......))))))..)))))).)))))))).))))))))). ( -35.40) >DroEre_CAF1 34336 117 - 1 ACAAUCCUAAACAGCGUUACGUGGCGUCAAACGCGAUCUCAUGGUGUUUCUAACAUCGGACUGCACGCAAGAGGAGUGCCAAGACUUCUACCGUGCGAAUGAGAUCAAUAUGCUCGA ............(((((......(((.....)))(((((((((((((.....)))))....((((((....((((((......))))))..)))))).))))))))...)))))... ( -36.10) >DroYak_CAF1 33630 117 - 1 AUAAUCCUAAAUAGCGUUACGUGGCGUGAAACGCGAUCUCAUGGUGUUGCUAACAUUCCAAUGCAAGCAAAGGGAGUGCCAAGACUUCUACCGUGCGAAUGAGAUCAUGAUGCUCGA ............(((((((....(((.....)))((((((((.((((((.........))))))..(((..((((((......))))))....)))..)))))))).)))))))... ( -32.60) >DroAna_CAF1 32398 114 - 1 GCU---CUUUCCAGGAUUGCGUGGUGUCAAGCGGAAGCUAAUGGUUCAUCUGAUCUCGGAGUGUAAAAACAGGCAGUGUCAGGACUAUUAUCGCCAGAAUGAGAUUAGAAUACUGGA ...---...(((((.........(..((((((....)))..)))..).((((((((((..((......)).(((.(((..........))).)))....))))))))))...))))) ( -30.30) >consensus ACAAUCCUCAUUAGCGUUACGUGGCGUCAAACGCGAUCUCAUGGUGAUUCUAACCUCGGACUGCACGCAAAGGGAGUGCCAAGACUUCUACCGUGCGAAUGAGAUCAUGAUGCUGGA ..........((((((((..(((........)))(((((((((((.......)))......((((((....((((((......))))))..)))))).))))))))..)))))))). (-23.19 = -24.67 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:54 2006