Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,094,423 – 3,094,519 |
Length | 96 |
Max. P | 0.918270 |
Location | 3,094,423 – 3,094,519 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -32.13 |
Consensus MFE | -23.42 |
Energy contribution | -23.40 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.25 |
Mean z-score | -2.25 |
Structure conservation index | 0.73 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3094423 96 + 23771897 AUAAAUUGGCAACGCUAACAAUCCGAGUAUCAAUAGCCUUACCAGCGGACACGAGGGUUGUUGGAGCUGCAUAAGCCAGUCUAUGGAGCAGCAU---CC--------------------- .......(....).((((((((((..((.((....((.......)).)).))..)))))))))).(((((.....(((.....))).)))))..---..--------------------- ( -29.60) >DroSec_CAF1 27283 96 + 1 AUAAACUGGCAAUGCUAACAAUCCGAGUAUCAAUAGCCUCACCAGCGGACACGAGGGUUGUUGGAGCUGCAUAAGCCAGUCAAUGGAGCAGCAU---CC--------------------- ..............((((((((((..((.((....((.......)).)).))..)))))))))).(((((.....(((.....))).)))))..---..--------------------- ( -28.60) >DroSim_CAF1 29771 96 + 1 AUAAACUGGCAACGCUAACAAUCCGAGUAUCAAUAGCCUCACCAGCGGACACGAGGGUUGUUGGAGCUGCAUAAGCCAGUCAAUGGAGCAGCAU---CC--------------------- .......(....).((((((((((..((.((....((.......)).)).))..)))))))))).(((((.....(((.....))).)))))..---..--------------------- ( -29.60) >DroEre_CAF1 31921 96 + 1 AUAAACUGGCAACGCUAACAAUCCGAGUAUUAAGAGCCUCACCAGAGGACACGAGGGUUGUUGGAGUUGCAUAAGCCAGUCUAUGGAGCAGCAC---CC--------------------- .....((((((((.((((((((((..((........((((....))))..))..)))))))))).))))).....(((.....)))..)))...---..--------------------- ( -31.50) >DroYak_CAF1 31226 96 + 1 AUAAACUGGCAAUGCCAACAAUCCGAGUAUCAAGAGCCUCACCAGCGGACACGAGGAUUGUUGGAGUUGCAUAAGCCAGUCUAUGGAGCAGCAU---CC--------------------- .....((((((((.((((((((((..((.((....((.......)).)).))..)))))))))).))))).....(((.....)))..)))...---..--------------------- ( -31.90) >DroAna_CAF1 26033 120 + 1 GUAGAGGGGCAGGACCACCAGUCCCAUUAUCAUUAGCCUAACCAGUGGACACGAUGACUGCUGCAACUGCAUCAGCCAAUCCAAGGAGCAGCAGUAUCCCGGCUUCACUUGCUCCUCCUG ...((((((((((((.....))))...................((((((..((...((((((((....((....))...((....))))))))))....))..))))))))))))))... ( -41.60) >consensus AUAAACUGGCAACGCUAACAAUCCGAGUAUCAAUAGCCUCACCAGCGGACACGAGGGUUGUUGGAGCUGCAUAAGCCAGUCUAUGGAGCAGCAU___CC_____________________ ..............((((((((((..((.((....((.......)).)).))..)))))))))).(((((.....(((.....))).)))))............................ (-23.42 = -23.40 + -0.02)
Location | 3,094,423 – 3,094,519 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -19.70 |
Energy contribution | -21.23 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.17 |
Mean z-score | -1.62 |
Structure conservation index | 0.60 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3094423 96 - 23771897 ---------------------GG---AUGCUGCUCCAUAGACUGGCUUAUGCAGCUCCAACAACCCUCGUGUCCGCUGGUAAGGCUAUUGAUACUCGGAUUGUUAGCGUUGCCAAUUUAU ---------------------((---(.(((((.(((.....))).....))))))))..................((((((.((((..(((......)))..)))).))))))...... ( -27.20) >DroSec_CAF1 27283 96 - 1 ---------------------GG---AUGCUGCUCCAUUGACUGGCUUAUGCAGCUCCAACAACCCUCGUGUCCGCUGGUGAGGCUAUUGAUACUCGGAUUGUUAGCAUUGCCAGUUUAU ---------------------((---(.(((((.(((.....))).....))))))))................(((((..(.((((..(((......)))..)))).)..))))).... ( -28.70) >DroSim_CAF1 29771 96 - 1 ---------------------GG---AUGCUGCUCCAUUGACUGGCUUAUGCAGCUCCAACAACCCUCGUGUCCGCUGGUGAGGCUAUUGAUACUCGGAUUGUUAGCGUUGCCAGUUUAU ---------------------((---(.(((((.(((.....))).....))))))))................(((((..(.((((..(((......)))..)))).)..))))).... ( -30.80) >DroEre_CAF1 31921 96 - 1 ---------------------GG---GUGCUGCUCCAUAGACUGGCUUAUGCAACUCCAACAACCCUCGUGUCCUCUGGUGAGGCUCUUAAUACUCGGAUUGUUAGCGUUGCCAGUUUAU ---------------------((---(......)))((((((((((..((((......(((((.((..((((((((....))))......))))..)).))))).)))).)))))))))) ( -28.20) >DroYak_CAF1 31226 96 - 1 ---------------------GG---AUGCUGCUCCAUAGACUGGCUUAUGCAACUCCAACAAUCCUCGUGUCCGCUGGUGAGGCUCUUGAUACUCGGAUUGUUGGCAUUGCCAGUUUAU ---------------------((---(......)))((((((((((..((((.....(((((((((..(((((.(((.....)))....)))))..))))))))))))).)))))))))) ( -38.10) >DroAna_CAF1 26033 120 - 1 CAGGAGGAGCAAGUGAAGCCGGGAUACUGCUGCUCCUUGGAUUGGCUGAUGCAGUUGCAGCAGUCAUCGUGUCCACUGGUUAGGCUAAUGAUAAUGGGACUGGUGGUCCUGCCCCUCUAC ..(((((.(((.(.((.((((((((((((((((...(((.(((....))).)))..)))))))).)))...(((....((((......))))....))))))))..)))))).))))).. ( -43.90) >consensus _____________________GG___AUGCUGCUCCAUAGACUGGCUUAUGCAGCUCCAACAACCCUCGUGUCCGCUGGUGAGGCUAUUGAUACUCGGAUUGUUAGCGUUGCCAGUUUAU ....................................((((((((((..((((......(((((.((..(((((...(((.....)))..)))))..)).))))).)))).)))))))))) (-19.70 = -21.23 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:53 2006