Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,090,787 – 3,090,887 |
Length | 100 |
Max. P | 0.992171 |
Location | 3,090,787 – 3,090,887 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -30.05 |
Consensus MFE | -26.86 |
Energy contribution | -26.93 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -3.06 |
Structure conservation index | 0.89 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3090787 100 + 23771897 UUGAAUGUAUUGUAGCAGCGGAGAGUAUAGCUAAGCUUAGUUUGGCCCCCGGAUUGAGCAGGGUUUUUUUCGGUUUUUGUUGCUUUGGUGUUUGGUGUUU- (..((..(...((((((((.(((((...((((..(((((((((((...)))))))))))..)))).))))).))...))))))....)..))..).....- ( -29.80) >DroSec_CAF1 23604 91 + 1 UUGAAUG-----UAGCAGCGGAGAGUAUAGCUGAGCUUAGUUUGGCCCCCGGAUUGAGCAGGGUU----UCGGUUUUUGUAGCUUUGGUGUUUGGUGUUU- (..((..-----((((.(((((((.(..((((..(((((((((((...)))))))))))..))))----..).))))))).)))...)..))..).....- ( -26.70) >DroSim_CAF1 25668 91 + 1 UUGAAUA-----UAGCAGCGGAGAGUAUAGCUGAGCUUAGUUUGGCCCCCGGAUUGAGCAGGGUU----UCGGUUUUUGUUGCUUUGGUGUUUGGUGUUU- (..((((-----((((((((((((.(..((((..(((((((((((...)))))))))))..))))----..).)))))))))))...)))))..).....- ( -32.20) >DroEre_CAF1 28159 92 + 1 UUGAAUG-----UAGCAGCGGAGAGUAUAGCUGAGCUUAGUUUGGCCCCCGGAUUGAGCGGGGUU----UCGGUUUUUGUUGCUUUGGUGUUUGGUGUUUU (..((..-----((((((((((((.(..((((..(((((((((((...)))))))))))..))))----..).)))))))))))...)..))..)...... ( -31.50) >consensus UUGAAUG_____UAGCAGCGGAGAGUAUAGCUGAGCUUAGUUUGGCCCCCGGAUUGAGCAGGGUU____UCGGUUUUUGUUGCUUUGGUGUUUGGUGUUU_ (..((((......(((((((((((.(..((((..(((((((((((...)))))))))))..))))......).)))))))))))....))))..)...... (-26.86 = -26.93 + 0.06)
Location | 3,090,787 – 3,090,887 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -11.88 |
Consensus MFE | -11.36 |
Energy contribution | -11.43 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.65 |
Structure conservation index | 0.96 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3090787 100 - 23771897 -AAACACCAAACACCAAAGCAACAAAAACCGAAAAAAACCCUGCUCAAUCCGGGGGCCAAACUAAGCUUAGCUAUACUCUCCGCUGCUACAAUACAUUCAA -................((((.(...............(((((.......))))).........(((...))).........).))))............. ( -11.40) >DroSec_CAF1 23604 91 - 1 -AAACACCAAACACCAAAGCUACAAAAACCGA----AACCCUGCUCAAUCCGGGGGCCAAACUAAGCUCAGCUAUACUCUCCGCUGCUA-----CAUUCAA -.............................((----(.(((((.......))))).........(((..(((..........)))))).-----..))).. ( -11.10) >DroSim_CAF1 25668 91 - 1 -AAACACCAAACACCAAAGCAACAAAAACCGA----AACCCUGCUCAAUCCGGGGGCCAAACUAAGCUCAGCUAUACUCUCCGCUGCUA-----UAUUCAA -................((((.(.........----..(((((.......))))).........(((...))).........).)))).-----....... ( -11.40) >DroEre_CAF1 28159 92 - 1 AAAACACCAAACACCAAAGCAACAAAAACCGA----AACCCCGCUCAAUCCGGGGGCCAAACUAAGCUCAGCUAUACUCUCCGCUGCUA-----CAUUCAA .................((((.(.........----..(((((.......))))).........(((...))).........).)))).-----....... ( -13.60) >consensus _AAACACCAAACACCAAAGCAACAAAAACCGA____AACCCUGCUCAAUCCGGGGGCCAAACUAAGCUCAGCUAUACUCUCCGCUGCUA_____CAUUCAA .................((((.(...............(((((.......))))).........(((...))).........).))))............. (-11.36 = -11.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:51 2006