Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,088,904 – 3,089,018 |
Length | 114 |
Max. P | 0.999835 |
Location | 3,088,904 – 3,089,018 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 93.54 |
Mean single sequence MFE | -24.38 |
Consensus MFE | -21.74 |
Energy contribution | -21.42 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.07 |
Mean z-score | -2.82 |
Structure conservation index | 0.89 |
SVM decision value | 4.20 |
SVM RNA-class probability | 0.999835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3088904 114 + 23771897 UGCGAAAACCUAUCACGGAGACAAUGAAAACUUGGGCAAUUAGCAUUUCUUAUUGUUUUUCGUUUUUCGUUUUCAUUUUCGAAAUGCUUAAAUUUCGACCUGCUCCACAUUAUA ................((((.((((((((((..((((.(..((((........))))..).))))...))))))))).(((((((......)))))))...)))))........ ( -24.10) >DroSec_CAF1 21726 107 + 1 UGCAAAAUCCUAUCACGGAGACAAUGAAAACUUAAGCAAUUAGCAUUUCUUAUUGUUUUU-------CGUUUUCAUUUUCGAAAUGCUUAAAUUUCGAACUGCUCCACAUUAUA ................((((.((((((((((..(((((((.((.....)).)))))))..-------.)))))))))((((((((......))))))))..)))))........ ( -26.00) >DroSim_CAF1 23774 114 + 1 UGCAAAAUCCUAUCACGGAGACAAUGAAAACUUGGGCAAUUAGCAUUUCUUAUUGUUUUUCGUAUUUCGUUUUCAUUUUCGAAAUGCUUAAAUUUCGAACUGCUCCACAUUAUA ................((((.((((((((((....((.(..((((........))))..).)).....)))))))))((((((((......))))))))..)))))........ ( -23.80) >DroEre_CAF1 26184 107 + 1 UGCAAAAACCUAUCACGGAGACAAUGAAAACCUGGGCAAUUAGCAUUUCUUAUUGUUUUUC-------GUUUUCAUUUUCGAAAUGCUUAAAUUUCGACCUGCUCCACAUUAUA ................((((.((((((((((..(((((((.((.....)).)))))))...-------))))))))).(((((((......)))))))...)))))........ ( -24.60) >DroYak_CAF1 25402 112 + 1 UGCAAAAUCCUAUCACGGAGACAAUGAAAACUUGGGCAAUUAGCAUUUCUUAUUGUUUUUCGU--UUCGUUUUCAUUUUCGAAAUGCUUAAAUUUCGACCUGCUCCACAUUAUA ................((((.((((((((((..((((.(..((((........))))..).))--)).))))))))).(((((((......)))))))...)))))........ ( -23.40) >consensus UGCAAAAUCCUAUCACGGAGACAAUGAAAACUUGGGCAAUUAGCAUUUCUUAUUGUUUUUCGU__UUCGUUUUCAUUUUCGAAAUGCUUAAAUUUCGACCUGCUCCACAUUAUA ................((((.((((((((((..(((((((.((.....)).)))))))..........))))))))).(((((((......)))))))...)))))........ (-21.74 = -21.42 + -0.32)
Location | 3,088,904 – 3,089,018 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 93.54 |
Mean single sequence MFE | -21.94 |
Consensus MFE | -20.42 |
Energy contribution | -20.26 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.13 |
Structure conservation index | 0.93 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3088904 114 - 23771897 UAUAAUGUGGAGCAGGUCGAAAUUUAAGCAUUUCGAAAAUGAAAACGAAAAACGAAAAACAAUAAGAAAUGCUAAUUGCCCAAGUUUUCAUUGUCUCCGUGAUAGGUUUUCGCA ........(((((...(((((((......))))))).((((((((((.....)......((((.((.....)).)))).....)))))))))).))))((((.......)))). ( -22.80) >DroSec_CAF1 21726 107 - 1 UAUAAUGUGGAGCAGUUCGAAAUUUAAGCAUUUCGAAAAUGAAAACG-------AAAAACAAUAAGAAAUGCUAAUUGCUUAAGUUUUCAUUGUCUCCGUGAUAGGAUUUUGCA ........(((((..((((((((......))))))))(((((((((.-------.....((((.((.....)).)))).....)))))))))).))))(..(.......)..). ( -23.60) >DroSim_CAF1 23774 114 - 1 UAUAAUGUGGAGCAGUUCGAAAUUUAAGCAUUUCGAAAAUGAAAACGAAAUACGAAAAACAAUAAGAAAUGCUAAUUGCCCAAGUUUUCAUUGUCUCCGUGAUAGGAUUUUGCA ........(((((..((((((((......))))))))((((((((((.....)......((((.((.....)).)))).....)))))))))).))))(..(.......)..). ( -21.30) >DroEre_CAF1 26184 107 - 1 UAUAAUGUGGAGCAGGUCGAAAUUUAAGCAUUUCGAAAAUGAAAAC-------GAAAAACAAUAAGAAAUGCUAAUUGCCCAGGUUUUCAUUGUCUCCGUGAUAGGUUUUUGCA ........(((((...(((((((......))))))).(((((((((-------......((((.((.....)).)))).....)))))))))).))))(..(.......)..). ( -21.60) >DroYak_CAF1 25402 112 - 1 UAUAAUGUGGAGCAGGUCGAAAUUUAAGCAUUUCGAAAAUGAAAACGAA--ACGAAAAACAAUAAGAAAUGCUAAUUGCCCAAGUUUUCAUUGUCUCCGUGAUAGGAUUUUGCA ........(((((...(((((((......))))))).(((((((((...--.............(....)((.....))....)))))))))).))))(..(.......)..). ( -20.40) >consensus UAUAAUGUGGAGCAGGUCGAAAUUUAAGCAUUUCGAAAAUGAAAACGAA__ACGAAAAACAAUAAGAAAUGCUAAUUGCCCAAGUUUUCAUUGUCUCCGUGAUAGGAUUUUGCA ........(((((...(((((((......))))))).(((((((((..................(....)((.....))....)))))))))).))))((((.......)))). (-20.42 = -20.26 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:50 2006