Locus 1049

Sequence ID 3L_DroMel_CAF1
Location 3,088,074 – 3,088,167
Length 93
Max. P 0.555597
window1626

overview

Window 6

Location 3,088,074 – 3,088,167
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 87.87
Mean single sequence MFE -27.83
Consensus MFE -21.71
Energy contribution -22.05
Covariance contribution 0.34
Combinations/Pair 1.20
Mean z-score -2.26
Structure conservation index 0.78
SVM decision value 0.04
SVM RNA-class probability 0.555597
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3088074 93 - 23771897
GCAUUUUUCUCUACGCUCUUGUCG-UAUUAUU---UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUACGAUUGGGCGUAUACGUAAUGCGAGUG-----
(((((......(((((((..((((-((((...---.............(((....)))((....)))))))))).))))))).....))))).....----- ( -28.80)
>DroSec_CAF1 20909 97 - 1
GCAUUUUUCUCUACGCUCUUGUUG-UAUUAUU---UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUACGACUGGGCGUAUACGUAAUGCGAGUGUCAG-
(((((......(((((((..((((-((((...---.............(((....)))((....)))))))))).))))))).....))))).........- ( -28.30)
>DroSim_CAF1 22968 86 - 1
GCAUUUUUCUCUACGCUCUUGUCG-UAUUAUU---UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUACGACUGGGCGUAUACGUAAU------------
...........(((((((..((((-((((...---.............(((....)))((....)))))))))).)))))))........------------ ( -25.20)
>DroEre_CAF1 25353 97 - 1
GCAUUUUUCUCCACGCUCUUGUCG-UUUUAUU---UUUGUAUUAUUGUGACGGAAGUAGCUAAUGCGGUCCGACUGGGCGUAUACGUAAUGCGAGUGCCAA-
(((((.......((((((..((((-.......---.((((((((..((.((....)).))))))))))..)))).))))))......))))).........- ( -25.12)
>DroYak_CAF1 24562 97 - 1
GCAUUUUUCUCUACGCUCUUGUCG-UAUUACU---UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUGCGACUGGGCGUAUACGUAAUGCGAGUGCCAG-
(((((......(((((((..((((-(((..(.---...........(..((....))..)....)..))))))).))))))).....))))).........- ( -30.99)
>DroAna_CAF1 19473 102 - 1
GCAUUUUUCUUUACGGUCUUGUUGCUGUUAUUCGGUUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGCACAACGGGGCGUAUACGUAAUGCGAAUGUCAGG
(((((......((((.(((((((((((((((..(((....)))...)))))))..(((((....))))).)))))))))))).....))))).......... ( -28.60)
>consensus
GCAUUUUUCUCUACGCUCUUGUCG_UAUUAUU___UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUACGACUGGGCGUAUACGUAAUGCGAGUG_CAG_
(((((......(((((((..((((.((((...................(((....)))((....)))))))))).))))))).....))))).......... (-21.71 = -22.05 +   0.34) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:48 2006