Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,088,074 – 3,088,167 |
Length | 93 |
Max. P | 0.555597 |
Location | 3,088,074 – 3,088,167 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 87.87 |
Mean single sequence MFE | -27.83 |
Consensus MFE | -21.71 |
Energy contribution | -22.05 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.20 |
Mean z-score | -2.26 |
Structure conservation index | 0.78 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3088074 93 - 23771897 GCAUUUUUCUCUACGCUCUUGUCG-UAUUAUU---UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUACGAUUGGGCGUAUACGUAAUGCGAGUG----- (((((......(((((((..((((-((((...---.............(((....)))((....)))))))))).))))))).....))))).....----- ( -28.80) >DroSec_CAF1 20909 97 - 1 GCAUUUUUCUCUACGCUCUUGUUG-UAUUAUU---UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUACGACUGGGCGUAUACGUAAUGCGAGUGUCAG- (((((......(((((((..((((-((((...---.............(((....)))((....)))))))))).))))))).....))))).........- ( -28.30) >DroSim_CAF1 22968 86 - 1 GCAUUUUUCUCUACGCUCUUGUCG-UAUUAUU---UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUACGACUGGGCGUAUACGUAAU------------ ...........(((((((..((((-((((...---.............(((....)))((....)))))))))).)))))))........------------ ( -25.20) >DroEre_CAF1 25353 97 - 1 GCAUUUUUCUCCACGCUCUUGUCG-UUUUAUU---UUUGUAUUAUUGUGACGGAAGUAGCUAAUGCGGUCCGACUGGGCGUAUACGUAAUGCGAGUGCCAA- (((((.......((((((..((((-.......---.((((((((..((.((....)).))))))))))..)))).))))))......))))).........- ( -25.12) >DroYak_CAF1 24562 97 - 1 GCAUUUUUCUCUACGCUCUUGUCG-UAUUACU---UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUGCGACUGGGCGUAUACGUAAUGCGAGUGCCAG- (((((......(((((((..((((-(((..(.---...........(..((....))..)....)..))))))).))))))).....))))).........- ( -30.99) >DroAna_CAF1 19473 102 - 1 GCAUUUUUCUUUACGGUCUUGUUGCUGUUAUUCGGUUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGCACAACGGGGCGUAUACGUAAUGCGAAUGUCAGG (((((......((((.(((((((((((((((..(((....)))...)))))))..(((((....))))).)))))))))))).....))))).......... ( -28.60) >consensus GCAUUUUUCUCUACGCUCUUGUCG_UAUUAUU___UUUUUAUUAUUGUGACGGAAGUUGCUAAUGCGGUACGACUGGGCGUAUACGUAAUGCGAGUG_CAG_ (((((......(((((((..((((.((((...................(((....)))((....)))))))))).))))))).....))))).......... (-21.71 = -22.05 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:48 2006