Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,087,505 – 3,087,599 |
Length | 94 |
Max. P | 0.772428 |
Location | 3,087,505 – 3,087,599 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 85.60 |
Mean single sequence MFE | -31.10 |
Consensus MFE | -24.79 |
Energy contribution | -25.68 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.10 |
Mean z-score | -2.33 |
Structure conservation index | 0.80 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3087505 94 - 23771897 GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUUGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU ((((....).)))..(((.(.(((.....))).....((((((((((...((.(((((.......))))).))..))))))))))).))).... ( -32.90) >DroSec_CAF1 20300 94 - 1 GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUCGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU ((((....).)))..(((.(.(((.....)))......(((((((((...((.(((((.......))))).))..))))))))).).))).... ( -32.30) >DroSim_CAF1 22348 94 - 1 GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUCGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU ((((....).)))..(((.(.(((.....)))......(((((((((...((.(((((.......))))).))..))))))))).).))).... ( -32.30) >DroEre_CAF1 24666 94 - 1 GGCCAAAAGUGGCUGGCAACACGACGUUCUCGAUUCUUGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU (((((....))))).(((.(.(((.....))).....((((((((((...((.(((((.......))))).))..))))))))))).))).... ( -35.40) >DroYak_CAF1 23926 94 - 1 GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUUGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU ((((....).)))..(((.(.(((.....))).....((((((((((...((.(((((.......))))).))..))))))))))).))).... ( -32.90) >DroAna_CAF1 18968 72 - 1 AGUCAAG---------------CUC-------AUUCUCGGUUCUGAGAUGCUGGGCAAUCACUUUUGGCCUAGCCCUGACAGCCAGCUGCAGUU .......---------------...-------..(((((....))))).(((((((((......)).))))))).(((.(((....)))))).. ( -20.80) >consensus GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUCGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU .((((........)))).....................(((((((((...((.(((((.......))))).))..))))))))).......... (-24.79 = -25.68 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:47 2006