Locus 1048

Sequence ID 3L_DroMel_CAF1
Location 3,087,505 – 3,087,599
Length 94
Max. P 0.772428
window1625

overview

Window 5

Location 3,087,505 – 3,087,599
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 85.60
Mean single sequence MFE -31.10
Consensus MFE -24.79
Energy contribution -25.68
Covariance contribution 0.89
Combinations/Pair 1.10
Mean z-score -2.33
Structure conservation index 0.80
SVM decision value 0.53
SVM RNA-class probability 0.772428
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3087505 94 - 23771897
GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUUGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU
((((....).)))..(((.(.(((.....))).....((((((((((...((.(((((.......))))).))..))))))))))).))).... ( -32.90)
>DroSec_CAF1 20300 94 - 1
GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUCGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU
((((....).)))..(((.(.(((.....)))......(((((((((...((.(((((.......))))).))..))))))))).).))).... ( -32.30)
>DroSim_CAF1 22348 94 - 1
GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUCGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU
((((....).)))..(((.(.(((.....)))......(((((((((...((.(((((.......))))).))..))))))))).).))).... ( -32.30)
>DroEre_CAF1 24666 94 - 1
GGCCAAAAGUGGCUGGCAACACGACGUUCUCGAUUCUUGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU
(((((....))))).(((.(.(((.....))).....((((((((((...((.(((((.......))))).))..))))))))))).))).... ( -35.40)
>DroYak_CAF1 23926 94 - 1
GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUUGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU
((((....).)))..(((.(.(((.....))).....((((((((((...((.(((((.......))))).))..))))))))))).))).... ( -32.90)
>DroAna_CAF1 18968 72 - 1
AGUCAAG---------------CUC-------AUUCUCGGUUCUGAGAUGCUGGGCAAUCACUUUUGGCCUAGCCCUGACAGCCAGCUGCAGUU
.......---------------...-------..(((((....))))).(((((((((......)).))))))).(((.(((....)))))).. ( -20.80)
>consensus
GGCCAAAAGUGCCUGGCAACACGACGUUCUCGAUUCUCGGCUGUCGGCUUCUUGGCAAUCACUUUUUGCCCAGCCCUGACAGCCAGCUGCAACU
.((((........)))).....................(((((((((...((.(((((.......))))).))..))))))))).......... (-24.79 = -25.68 +   0.89) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:47 2006