Locus 1047

Sequence ID 3L_DroMel_CAF1
Location 3,087,027 – 3,087,121
Length 94
Max. P 0.697358
window1624

overview

Window 4

Location 3,087,027 – 3,087,121
Length 94
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 75.43
Mean single sequence MFE -22.83
Consensus MFE -13.75
Energy contribution -14.31
Covariance contribution 0.56
Combinations/Pair 1.26
Mean z-score -1.76
Structure conservation index 0.60
SVM decision value 0.34
SVM RNA-class probability 0.697358
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3087027 94 - 23771897
CACGUGCCAUGAUUAGUUUCCGCAUUCCAGAACAAUAGAAAAUUUUUAAUGUCAAAAUUAUUAUUGGUUUUGUGCGGCGAGCAGUGGUA------AAUCA
....((((((.....(((((((((...(((((((((((..((((((.......)))))).))))).))))))))))).)))).))))))------..... ( -21.10)
>DroSec_CAF1 19810 94 - 1
CACGUGCCAUGGUUAGUUACCGCAUUCCAGAACAAAAGAAAAUGUUUAAUGCCAAAAUUACCAUUGGUUUUAUGCGGUGAGCAGUGGCA------AAUCA
....((((((.((...(((((((((....(((((........)))))...(((((........)))))...))))))))))).))))))------..... ( -27.00)
>DroSim_CAF1 21877 75 - 1
AACGUGCUAUGGC----UUCCGCAUUCCAGAACAAAAGAAA---------------AUUACUAUCGGUUUUAUCCGGCGAGCAGUGGCA------AAUCA
....((((((.((----(..(((.(((..........))).---------------........(((......))))))))).))))))------..... ( -16.10)
>DroEre_CAF1 24187 100 - 1
CAAGUGCCAUGGUUUCUUUCCGUAUUCCAGAACAAAAGAAAACGUUAAAUGACAAAAUUGAUAUCGGUUUUGUCCGGGGAGCAGUGGCAGAGCAAAAUCA
....((((((.(((((((..(((.(((..........))).)))......((((((((((....)))))))))).))))))).))))))........... ( -27.10)
>consensus
CACGUGCCAUGGUUAGUUUCCGCAUUCCAGAACAAAAGAAAAUGUUUAAUG_CAAAAUUACUAUCGGUUUUAUCCGGCGAGCAGUGGCA______AAUCA
....((((((.((...(((((((((.((.....................................))....))))))))))).))))))........... (-13.75 = -14.31 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:46 2006